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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015609 through 18771 annotations produced 1 hits



N-cadherin (CadN):

Annotation Number : CG7100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015609
Gbrowse : chr2L:17649865-17739521 (-) // 100.0 //
Probeset : 1633000_a_at
Accessions : protein= NP_001027277; /// NP_001027278; /// NP_001027279; /// NP_001027280; /// NP_724068; /// NP_724069; /// NP_724070; /// NP_724071; /// NP_724072; /// NP_724073; /// NP_724074; /// NP_724075;, nucleotide= NM_001032106; /// NM_001032107; /// NM_001032108; /// NM_001032109; /// NM_165224; /// NM_165225; /// NM_165226; /// NM_165227; /// NM_165228; /// NM_165229; /// NM_165230; /// NM_165231;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004872 // receptor activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // in
FlyMine data for FBgn0015609.
Homophila reports that CG7100 is a close match (7e-11) to human gene NOTCH1;TAN1 (NP_060087), a gene associated with Aortic valve disease, 109730 (3);Leukemia, T-cell acute lymphoblastic (2).
BioGrid reports that CG7100 interacts with CG17947 CG11579 .
TRiP has 1 RNAi stocks for FBgn0015609 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015609 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 84 of 4 8.70Up
Head74 54 of 4 3.10Up
Eye93 94 of 4 3.88Up
Thoracicoabdominal ganglion164 144 of 4 6.80Up
Salivary gland8 20 of 4 0.34Down
Crop9 20 of 4 0.40Down
Midgut4 20 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut4 20 of 4 0.20Down
Heart15 23 of 4 0.63Down
Fat body6 20 of 4 0.28Down
Ovary4 00 of 4 0.20Down
Testis126 94 of 4 5.20Up
Male accessory glands79 24 of 4 3.30Up
Virgin spermatheca5 20 of 4 0.22Down
Mated spermatheca4 00 of 4 0.20Down
Adult carcass10 10 of 4 0.40Down
Larval CNS259 324 of 410.75Up
Larval Salivary gland4 10 of 4 0.17Down
Larval midgut6 20 of 4 0.25Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut6 10 of 4 0.28Down
Larval fat body20 42 of 4 0.80None
Larval trachea14 43 of 4 0.59Down
Larval carcass10 02 of 4 0.42Down
S2 cells (growing)6 10 of 4 0.25Down
Whole fly24 24 of 4

Looking for FBgn0015609. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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