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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015614 through 18771 annotations produced 1 hits



chr2R:3673516-3675640 (+) // 99.56 // (Calcineurin B2):

Annotation Number : CG11217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627067_at
Accessions : protein= , nucleotide= NP_524874;
Pathway : 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephospho
Interpro : 0005955 // calcineurin complex // inferred from sequence or structural similarity /// 0005955 // calcineurin complex //
FlyMine data for full length.
BioGrid reports that CG11217 interacts with CG4209 CG9842 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain322 ± 114 of 4 0.50Down
Head335 ± 104 of 4 0.60Down
Eye526 ± 254 of 4 0.88None
Thoracicoabdominal ganglion414 ± 284 of 4 0.70Down
Salivary gland2502 ± 914 of 4 4.19Up
Crop825 ± 174 of 4 1.40Up
Midgut379 ± 104 of 4 0.60Down
Tubule692 ± 124 of 4 1.20Up
Hindgut489 ± 114 of 4 0.80None
Heart1210 ± 194 of 4 2.03Up
Fat body941 ± 874 of 4 1.58Up
Ovary1157 ± 134 of 4 1.90Up
Testis207 ± 114 of 4 0.30Down
Male accessory glands604 ± 84 of 4 1.00None
Virgin spermatheca827 ± 294 of 4 1.39Up
Mated spermatheca746 ± 94 of 4 1.25Up
Adult carcass956 ± 234 of 4 1.60Up
Larval CNS298 ± 234 of 4 0.50Down
Larval Salivary gland1660 ± 244 of 4 2.78Up
Larval midgut607 ± 184 of 4 1.02None
Larval tubule1006 ± 304 of 4 1.70Up
Larval hindgut617 ± 64 of 4 1.03None
Larval fat body449 ± 224 of 4 0.80Down
Larval trachea646 ± 454 of 4 1.08None
Larval carcass708 ± 284 of 4 1.19None
S2 cells (growing)650 ± 94 of 4 1.09None
Whole fly596 ± 404 of 4

Looking for FBgn0015614. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime