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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015622 through 18771 annotations produced 1 hits



calnexin (Cnx99A):

Annotation Number : CG11958
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015622
Gbrowse : chr3R:25140972-25145366 (-) // 100.0 //
Probeset : 1627261_s_at
Accessions : protein= NP_001036766; /// NP_001036767; /// NP_477157; /// NP_733286;, nucleotide= NM_001043301; /// NM_001043302; /// NM_057809; /// NM_170407;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferre
FlyMine data for FBgn0015622.
BioGrid reports that CG11958 interacts with CG13030 .
TRiP has 1 RNAi stocks for FBgn0015622 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain604 194 of 4 1.20Up
Head852 624 of 4 1.60Up
Eye1495 1534 of 4 2.89Up
Thoracicoabdominal ganglion767 144 of 4 1.50Up
Salivary gland1401 744 of 4 2.71Up
Crop485 114 of 4 0.90None
Midgut841 304 of 4 1.60Up
Tubule590 274 of 4 1.10Up
Hindgut543 94 of 4 1.10None
Heart568 94 of 4 1.10Up
Fat body838 514 of 4 1.62Up
Ovary683 204 of 4 1.30Up
Testis1085 214 of 4 2.10Up
Male accessory glands2675 384 of 4 5.20Up
Virgin spermatheca790 534 of 4 1.53Up
Mated spermatheca779 174 of 4 1.51Up
Adult carcass506 114 of 4 1.00None
Larval CNS1010 624 of 4 1.95Up
Larval Salivary gland2552 344 of 4 4.93Up
Larval midgut1320 834 of 4 2.55Up
Larval tubule1375 434 of 4 2.70Up
Larval hindgut832 284 of 4 1.61Up
Larval fat body899 574 of 4 1.70Up
Larval trachea417 764 of 4 0.81None
Larval carcass761 344 of 4 1.47Up
S2 cells (growing)1724 254 of 4 3.33Up
Whole fly517 104 of 4

Looking for FBgn0015622. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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