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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015664 through 18771 annotations produced 1 hits



DNA-replication-related element factor (Dref):

Annotation Number : CG5838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015664
Gbrowse : chr2L:9964146-9967247 (-) // 100.0 //
Probeset : 1625793_at
Accessions : protein= NP_523529;, nucleotide= NM_078805;
Pathway : DNA-dependent // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter
Interpro : 0005667 // transcription factor complex // inferred from physical interaction
FlyMine data for FBgn0015664.
BioGrid reports that CG5838 interacts with CG10159 CG8295 .
TRiP has 3 RNAi stocks for FBgn0015664 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015664 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 34 of 4 1.10None
Head86 34 of 4 0.50Down
Eye47 24 of 4 0.29Down
Thoracicoabdominal ganglion150 54 of 4 0.90None
Salivary gland82 44 of 4 0.51Down
Crop99 44 of 4 0.60Down
Midgut95 14 of 4 0.60Down
Tubule89 24 of 4 0.60Down
Hindgut91 44 of 4 0.60Down
Heart50 34 of 4 0.31Down
Fat body52 64 of 4 0.32Down
Ovary496 124 of 4 3.10Up
Testis29 24 of 4 0.20Down
Male accessory glands99 64 of 4 0.60Down
Virgin spermatheca47 34 of 4 0.29Down
Mated spermatheca63 14 of 4 0.39Down
Adult carcass54 54 of 4 0.30Down
Larval CNS459 564 of 4 2.84Up
Larval Salivary gland235 194 of 4 1.45Up
Larval midgut79 44 of 4 0.49Down
Larval tubule90 34 of 4 0.60Down
Larval hindgut125 44 of 4 0.78None
Larval fat body84 94 of 4 0.50Down
Larval trachea175 164 of 4 1.08None
Larval carcass148 44 of 4 0.92None
S2 cells (growing)313 114 of 4 1.94Up
Whole fly161 124 of 4

Looking for FBgn0015664. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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