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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015714 through 18771 annotations produced 1 hits



Cyp6a17 (Cyp6a17):

Annotation Number : CG10241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015714
Gbrowse : chr2R:10761476-10763064 (+) // 100.0 //
Probeset : 1628052_at
Accessions : protein= NP_652018;, nucleotide= NM_143761;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015714.
BDGP gene expression has embryonic in situ data for Cyp6a17: 10 pix of staining in 5 body parts.
Homophila reports that CG10241 is a close match (2e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
TRiP has 1 RNAi stocks for FBgn0015714 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 04 of 4 2.10Up
Head154 ± 194 of 4 2.60Up
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion79 ± 54 of 4 1.40Up
Salivary gland18 ± 41 of 4 0.32Down
Crop299 ± 274 of 4 5.10Up
Midgut143 ± 114 of 4 2.40Up
Tubule594 ± 344 of 410.10Up
Hindgut408 ± 424 of 4 6.90Up
Heart31 ± 183 of 4 0.53None
Fat body16 ± 153 of 4 0.27Down
Ovary6 ± 13 of 4 0.10Down
Testis4 ± 02 of 4 0.10Down
Male accessory glands68 ± 154 of 4 1.20None
Virgin spermatheca56 ± 44 of 4 0.95None
Mated spermatheca63 ± 94 of 4 1.08None
Adult carcass50 ± 84 of 4 0.90None
Larval CNS8 ± 131 of 4 0.14Down
Larval Salivary gland6 ± 12 of 4 0.11Down
Larval midgut20 ± 93 of 4 0.35Down
Larval tubule60 ± 54 of 4 1.00None
Larval hindgut132 ± 1193 of 4 2.24None
Larval fat body37 ± 84 of 4 0.60None
Larval trachea47 ± 433 of 4 0.81None
Larval carcass3 ± 10 of 4 0.06Down
S2 cells (growing)435 ± 184 of 4 7.37Up
Whole fly59 ± 24 of 4

Looking for FBgn0015714. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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