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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015754 through 18771 annotations produced 1 hits



Paf-AHbeta (Lis-1):

Annotation Number : CG8440
Flybase ID : FBgn0015754
Gbrowse : chr2R:12066308-12072608 (+) // 99.86 //
Probeset : 1624854_s_at
Accessions : protein= NP_477160; /// NP_788370; /// NP_788371; /// NP_788372; /// NP_788373; /// NP_995852;, nucleotide= NM_057812; /// NM_176190; /// NM_176191; /// NM_176192; /// NM_176193; /// NM_206130;
Pathway : nurse cell to oocyte // inferred from mutant phenotype /// 0007312 // oocyte nucleus migration involved in oocyte dorsa
Interpro : centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay ///
FlyMine data for FBgn0015754.
BDGP gene expression has embryonic in situ data for Lis1: 18 pix of staining in 17 body parts.
Homophila reports that CG8440 is a close match (3e-11) to human gene BRWD3;MRX93 (NP_694984), a gene associated with Mental retardation, X-linked 93, 300659 (3).
BioGrid reports that CG8440 interacts with CG9704 CG9771 CG9206 CG17610 CG10079 .
TRiP has 2 RNAi stocks for FBgn0015754 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015754 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1579 494 of 411.20Up
Head791 884 of 4 5.60Up
Eye459 204 of 4 3.26Up
Thoracicoabdominal ganglion1725 564 of 412.20Up
Salivary gland84 54 of 4 0.60Down
Crop231 64 of 4 1.60Up
Midgut62 64 of 4 0.40Down
Tubule66 24 of 4 0.50Down
Hindgut151 24 of 4 1.10None
Heart227 94 of 4 1.61Up
Fat body154 284 of 4 1.09None
Ovary16 04 of 4 0.10Down
Testis6 03 of 4 0.00Down
Male accessory glands23 14 of 4 0.20Down
Virgin spermatheca145 84 of 4 1.03None
Mated spermatheca153 94 of 4 1.09None
Adult carcass146 134 of 4 1.00None
Larval CNS975 924 of 4 6.92Up
Larval Salivary gland54 64 of 4 0.39Down
Larval midgut66 34 of 4 0.47Down
Larval tubule102 14 of 4 0.70Down
Larval hindgut101 14 of 4 0.72Down
Larval fat body80 34 of 4 0.60Down
Larval trachea73 124 of 4 0.52Down
Larval carcass94 54 of 4 0.67Down
S2 cells (growing)94 34 of 4 0.67Down
Whole fly140 104 of 4

Looking for FBgn0015754. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime