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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015756 through 18771 annotations produced 1 hits



anon-fast-evolving-3A6 (RpL9):

Annotation Number : CG6141
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015756
Gbrowse : chr2L:11002832-11004189 (-) // 100.0 //
Probeset : 1630634_s_at
Accessions : protein= NP_477161; /// NP_723644;, nucleotide= NM_057813; /// NM_164955;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0015756.
BDGP gene expression has embryonic in situ data for RpL9: 4 pix of staining in 1 body parts.
BioGrid reports that CG6141 interacts with CG9949 CG8291 CG8614 CG9511 CG3619 .
VDRC has 2 RNAi stocks for FBgn0015756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3159 484 of 4 0.70Down
Head4896 1664 of 4 1.20Up
Eye5577 904 of 4 1.31Up
Thoracicoabdominal ganglion4424 1394 of 4 1.00None
Salivary gland11694 5154 of 4 2.75Up
Crop6141 3404 of 4 1.40Up
Midgut5457 614 of 4 1.30Up
Tubule4838 764 of 4 1.10Up
Hindgut5415 1734 of 4 1.30Up
Heart7278 5184 of 4 1.71Up
Fat body6441 6784 of 4 1.51Up
Ovary3625 704 of 4 0.90Down
Testis1152 214 of 4 0.30Down
Male accessory glands9991 2254 of 4 2.30Up
Virgin spermatheca6376 2244 of 4 1.50Up
Mated spermatheca6649 1684 of 4 1.56Up
Adult carcass6150 1774 of 4 1.40Up
Larval CNS3090 2134 of 4 0.73Down
Larval Salivary gland8890 3884 of 4 2.09Up
Larval midgut4639 924 of 4 1.09None
Larval tubule5331 794 of 4 1.30Up
Larval hindgut4884 644 of 4 1.15Up
Larval fat body8679 9834 of 4 2.00Up
Larval trachea6085 2684 of 4 1.43Up
Larval carcass5291 3394 of 4 1.24Up
S2 cells (growing)5173 504 of 4 1.22Up
Whole fly4257 1934 of 4

Looking for FBgn0015756. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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