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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015773 through 18771 annotations produced 1 hits



NETRIN (NetA):

Annotation Number : CG18657
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015773
Gbrowse : chrX:14498035-14547864 (-) // 100.0 //
Probeset : 1624408_at
Accessions : protein= NP_511154;, nucleotide= NM_078599;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0015773.
BDGP gene expression has embryonic in situ data for NetA: 67 pix of staining in 25 body parts.
Homophila reports that CG18657 is a close match (2e-12) to human gene HSPG2;PLC;SJS;SJA;SJS1 (NP_005520), a gene associated with Dyssegmental dysplasia, Silverman-Handmaker type, 224410 (3);Schwartz-Jampel syndrome, type 1, 255800 (3).
BioGrid reports that CG18657 interacts with CG7824 CG4700 CG8581 .
TRiP has 2 RNAi stocks for FBgn0015773 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 20 of 4 1.10None
Head15 31 of 4 0.90None
Eye27 24 of 4 1.58Up
Thoracicoabdominal ganglion5 20 of 4 0.30Down
Salivary gland3 00 of 4 0.19Down
Crop69 74 of 4 4.00Up
Midgut143 164 of 4 8.20Up
Tubule9 10 of 4 0.60Down
Hindgut72 54 of 4 4.20Up
Heart344 254 of 419.68Up
Fat body4 40 of 4 0.26Down
Ovary0 00 of 4 0.00Down
Testis16 30 of 4 1.00None
Male accessory glands52 30 of 4 3.00Up
Virgin spermatheca2 10 of 4 0.15Down
Mated spermatheca3 10 of 4 0.17Down
Adult carcass27 60 of 4 1.60None
Larval CNS67 124 of 4 3.86Up
Larval Salivary gland3 10 of 4 0.18Down
Larval midgut84 14 of 4 4.83Up
Larval tubule8 20 of 4 0.50None
Larval hindgut98 74 of 4 5.63Up
Larval fat body7 30 of 4 0.40None
Larval trachea16 01 of 4 0.92None
Larval carcass42 50 of 4 2.43Up
S2 cells (growing)0 00 of 4 0.05Down
Whole fly17 30 of 4

Looking for FBgn0015773. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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