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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015777 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:6789760-6798864 (-) // 100.0 //):

Annotation Number : CG9261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-
Gbrowse :
Probeset : 1625215_s_at
Accessions : protein= EC:3.6.3.9, nucleotide=
Interpro : "0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from el
FlyMine data for chr2-.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1779 294 of 4 9.20Up
Head991 694 of 4 5.10Up
Eye656 724 of 4 3.40Up
Thoracicoabdominal ganglion1860 864 of 4 9.60Up
Salivary gland140 184 of 4 0.73None
Crop356 244 of 4 1.80Up
Midgut16 24 of 4 0.10Down
Tubule14 13 of 4 0.10Down
Hindgut122 64 of 4 0.60Down
Heart264 34 of 4 1.37Up
Fat body68 124 of 4 0.35Down
Ovary30 34 of 4 0.20Down
Testis114 84 of 4 0.60Down
Male accessory glands170 84 of 4 0.90None
Virgin spermatheca122 74 of 4 0.64Down
Mated spermatheca142 74 of 4 0.74None
Adult carcass236 114 of 4 1.20None
Larval CNS1528 1014 of 4 7.91Up
Larval Salivary gland213 284 of 4 1.11None
Larval midgut27 24 of 4 0.14Down
Larval tubule14 33 of 4 0.10Down
Larval hindgut226 184 of 4 1.17None
Larval fat body66 54 of 4 0.30Down
Larval trachea464 554 of 4 2.41Up
Larval carcass145 104 of 4 0.75None
S2 cells (growing)255 254 of 4 1.32None
Whole fly193 224 of 4

Looking for FBgn0015777. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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