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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015790 through 18771 annotations produced 1 hits



lethal(3)93Bi (Rab11):

Annotation Number : CG5771
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015790
Gbrowse : chr3R:16937130-16941868 (+) // 100.0 //
Probeset : 1626902_a_at
Accessions : protein= NP_477170; /// NP_599137;, nucleotide= NM_057822; /// NM_134310;
Pathway : 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015790.
Homophila reports that CG5771 is a close match (5e-12) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
BioGrid reports that CG5771 interacts with CG9277 CG10901 CG4898 .
TRiP has 1 RNAi stocks for FBgn0015790 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015790 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain927 ± 294 of 4 1.10None
Head1091 ± 574 of 4 1.30Up
Eye1471 ± 214 of 4 1.80Up
Thoracicoabdominal ganglion1323 ± 234 of 4 1.60Up
Salivary gland2425 ± 864 of 4 2.97Up
Crop1210 ± 494 of 4 1.50Up
Midgut1208 ± 204 of 4 1.50Up
Tubule1099 ± 314 of 4 1.30Up
Hindgut1161 ± 114 of 4 1.40Up
Heart1904 ± 844 of 4 2.33Up
Fat body1313 ± 1084 of 4 1.61Up
Ovary922 ± 214 of 4 1.10None
Testis307 ± 124 of 4 0.40Down
Male accessory glands1345 ± 154 of 4 1.60Up
Virgin spermatheca1655 ± 384 of 4 2.03Up
Mated spermatheca1785 ± 644 of 4 2.19Up
Adult carcass958 ± 664 of 4 1.20None
Larval CNS1105 ± 514 of 4 1.35Up
Larval Salivary gland2308 ± 384 of 4 2.83Up
Larval midgut1524 ± 364 of 4 1.87Up
Larval tubule1789 ± 394 of 4 2.20Up
Larval hindgut1465 ± 354 of 4 1.80Up
Larval fat body2168 ± 2314 of 4 2.70Up
Larval trachea1575 ± 704 of 4 1.93Up
Larval carcass1327 ± 624 of 4 1.63Up
S2 cells (growing)1274 ± 124 of 4 1.56Up
Whole fly816 ± 774 of 4

Looking for FBgn0015790. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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