FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0015791 through 18771 annotations produced 1 hits

Rab-protein 14 (Rab14):

Annotation Number : CG4212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015791
Gbrowse : chr2L:14355146-14358400 (+) // 100.0 //
Probeset : 1623737_a_at
Accessions : protein= NP_477171; /// NP_788056; /// NP_788057;, nucleotide= NM_057823; /// NM_176042; /// NM_176043;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015791.
Homophila reports that CG4212 is a close match (1e-12) to human gene KRAS2;NS3;RASK2 (NP_004976), a gene associated with Bladder cancer, 109800 (3);Breast cancer, somatic, 114480 (3);Costello syndrome, 218040 (3);Leukemia, acute myelogenous (3);Lung cancer, 211980 (3);Noonan syndrome 3, 609942 (3);Pancreatic carcinoma, somatic, 260350 (3);Stomach cancer, 137215 (3).
TRiP has 2 RNAi stocks for FBgn0015791 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015791 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	793 ± 3	4 of 4	2.50	Up
Head	586 ± 25	4 of 4	1.90	Up
Eye	1153 ± 49	4 of 4	3.69	Up
Thoracicoabdominal ganglion	799 ± 22	4 of 4	2.60	Up
Salivary gland	320 ± 15	4 of 4	1.03	None
Crop	438 ± 14	4 of 4	1.40	Up
Midgut	234 ± 2	4 of 4	0.80	Down
Tubule	443 ± 14	4 of 4	1.40	Up
Hindgut	399 ± 9	4 of 4	1.30	Up
Heart	743 ± 41	4 of 4	2.38	Up
Fat body	311 ± 41	4 of 4	1.00	None
Ovary	367 ± 1	4 of 4	1.20	Up
Testis	689 ± 8	4 of 4	2.20	Up
Male accessory glands	316 ± 18	4 of 4	1.00	None
Virgin spermatheca	283 ± 8	4 of 4	0.91	None
Mated spermatheca	298 ± 11	4 of 4	0.95	None
Adult carcass	358 ± 6	4 of 4	1.10	Up
Larval CNS	353 ± 14	4 of 4	1.13	Up
Larval Salivary gland	629 ± 31	4 of 4	2.02	Up
Larval midgut	240 ± 13	4 of 4	0.77	Down
Larval tubule	693 ± 14	4 of 4	2.20	Up
Larval hindgut	307 ± 19	4 of 4	0.98	None
Larval fat body	302 ± 11	4 of 4	1.00	None
Larval trachea	252 ± 26	4 of 4	0.81	Down
Larval carcass	199 ± 11	4 of 4	0.64	Down
S2 cells (growing)	367 ± 7	4 of 4	1.18	Up
Whole fly	312 ± 12	4 of 4

Looking for FBgn0015791. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720