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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015793 through 18771 annotations produced 1 hits



rab-related protein 3 (Rab-RP3):

Annotation Number : CG7062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015793
Gbrowse : chr3L:8290287-8291605 (+) // 100.0 //
Probeset : 1624118_at
Accessions : protein= NP_523970;, nucleotide= NM_079246;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inf
FlyMine data for FBgn0015793.
BDGP gene expression has embryonic in situ data for Rab-RP3: 11 pix of staining in 6 body parts.
Homophila reports that CG7062 is a close match (6e-11) to human gene RRAS2;TC21 (NP_001096139), a gene associated with Ovarian carcinoma (3).
TRiP has 1 RNAi stocks for FBgn0015793 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 ± 44 of 4 1.00None
Head142 ± 44 of 4 1.00None
Eye190 ± 24 of 4 1.39Up
Thoracicoabdominal ganglion85 ± 44 of 4 0.60Down
Salivary gland127 ± 24 of 4 0.93None
Crop175 ± 54 of 4 1.30Up
Midgut134 ± 34 of 4 1.00None
Tubule163 ± 64 of 4 1.20Up
Hindgut156 ± 114 of 4 1.10None
Heart428 ± 224 of 4 3.14Up
Fat body149 ± 144 of 4 1.09None
Ovary196 ± 34 of 4 1.40Up
Testis329 ± 64 of 4 2.40Up
Male accessory glands357 ± 164 of 4 2.60Up
Virgin spermatheca201 ± 44 of 4 1.48Up
Mated spermatheca141 ± 114 of 4 1.03None
Adult carcass123 ± 54 of 4 0.90None
Larval CNS121 ± 54 of 4 0.89None
Larval Salivary gland64 ± 84 of 4 0.47Down
Larval midgut122 ± 54 of 4 0.90None
Larval tubule105 ± 74 of 4 0.80Down
Larval hindgut79 ± 54 of 4 0.58Down
Larval fat body189 ± 404 of 4 1.40None
Larval trachea111 ± 154 of 4 0.82None
Larval carcass85 ± 84 of 4 0.63Down
S2 cells (growing)139 ± 24 of 4 1.02None
Whole fly136 ± 74 of 4

Looking for FBgn0015793. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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