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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015794 through 18771 annotations produced 1 hits



rab-related protein 4 (Rab-RP4):

Annotation Number : CG3129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015794
Gbrowse : chrX:5564854-5565842 (-) // 100.0 //
Probeset : 1639629_at
Accessions : protein= NP_524744;, nucleotide= NM_080005;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype ///
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0015794.
BDGP gene expression has embryonic in situ data for Rab-RP4: 4 pix of staining in 1 body parts.
Homophila reports that CG3129 is a close match (3e-11) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
TRiP has 2 RNAi stocks for FBgn0015794 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015794 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 ± 54 of 4 1.20Up
Head388 ± 174 of 4 1.30Up
Eye523 ± 214 of 4 1.69Up
Thoracicoabdominal ganglion368 ± 104 of 4 1.20Up
Salivary gland656 ± 344 of 4 2.12Up
Crop887 ± 134 of 4 2.90Up
Midgut669 ± 194 of 4 2.20Up
Tubule576 ± 144 of 4 1.90Up
Hindgut633 ± 104 of 4 2.00Up
Heart657 ± 164 of 4 2.12Up
Fat body531 ± 854 of 4 1.72Up
Ovary281 ± 44 of 4 0.90None
Testis109 ± 24 of 4 0.40Down
Male accessory glands553 ± 264 of 4 1.80Up
Virgin spermatheca553 ± 254 of 4 1.79Up
Mated spermatheca562 ± 494 of 4 1.82Up
Adult carcass475 ± 144 of 4 1.50Up
Larval CNS257 ± 94 of 4 0.83Down
Larval Salivary gland337 ± 164 of 4 1.09None
Larval midgut501 ± 294 of 4 1.62Up
Larval tubule749 ± 94 of 4 2.40Up
Larval hindgut386 ± 254 of 4 1.25Up
Larval fat body488 ± 644 of 4 1.60None
Larval trachea518 ± 774 of 4 1.68Up
Larval carcass413 ± 314 of 4 1.34Up
S2 cells (growing)367 ± 54 of 4 1.19Up
Whole fly309 ± 124 of 4

Looking for FBgn0015794. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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