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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0015797 through 18771 annotations produced 1 hits

warthog (Rab6):

Annotation Number : CG6601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015797
Gbrowse : chr2L:12107279-12109124 (-) // 100.0 //
Probeset : 1629797_at
Accessions : protein= NP_477172;, nucleotide= NM_057824;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015797.
BDGP gene expression has embryonic in situ data for Rab6: 12 pix of staining in 8 body parts.
Homophila reports that CG6601 is a close match (1e-11) to human gene RRAS2;TC21 (NP_001096139), a gene associated with Ovarian carcinoma (3).
BioGrid reports that CG6601 interacts with CG7808 CG3340 CG3936 CG3936 .
TRiP has 2 RNAi stocks for FBgn0015797 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015797 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain106 34 of 4 0.90Down
Head103 34 of 4 0.90Down
Eye91 44 of 4 0.76Down
Thoracicoabdominal ganglion100 44 of 4 0.80Down
Salivary gland385 214 of 4 3.22Up
Crop141 84 of 4 1.20None
Midgut291 64 of 4 2.40Up
Tubule134 34 of 4 1.10Up
Hindgut225 54 of 4 1.90Up
Heart103 54 of 4 0.86Down
Fat body156 154 of 4 1.31Up
Ovary145 34 of 4 1.20Up
Testis29 34 of 4 0.20Down
Male accessory glands158 94 of 4 1.30Up
Virgin spermatheca100 14 of 4 0.84Down
Mated spermatheca122 44 of 4 1.02None
Adult carcass103 24 of 4 0.90Down
Larval CNS233 294 of 4 1.95Up
Larval Salivary gland1333 1084 of 411.14Up
Larval midgut295 124 of 4 2.47Up
Larval tubule374 64 of 4 3.10Up
Larval hindgut291 74 of 4 2.44Up
Larval fat body211 194 of 4 1.80Up
Larval trachea172 104 of 4 1.44Up
Larval carcass273 84 of 4 2.28Up
S2 cells (growing)342 104 of 4 2.86Up
Whole fly119 44 of 4

Looking for FBgn0015797. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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