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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015801 through 18771 annotations produced 1 hits



Drosophila Rhythmically expressed gene 5 (Reg-5):

Annotation Number : CG2928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015801
Gbrowse : chr2R:20675525-20680929 (-) // 100.0 //
Probeset : 1627005_at
Accessions : protein= NP_477173;, nucleotide= NM_057825;
FlyMine data for FBgn0015801.
BDGP gene expression has embryonic in situ data for Reg-5: 41 pix of staining in 14 body parts.
VDRC has 1 RNAi stocks for FBgn0015801 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 44 of 4 0.30Down
Head462 ± 204 of 4 3.00Up
Eye518 ± 254 of 4 3.38Up
Thoracicoabdominal ganglion64 ± 34 of 4 0.40Down
Salivary gland68 ± 43 of 4 0.44Down
Crop889 ± 234 of 4 5.80Up
Midgut27 ± 14 of 4 0.20Down
Tubule12 ± 10 of 4 0.10Down
Hindgut733 ± 154 of 4 4.80Up
Heart173 ± 74 of 4 1.13None
Fat body191 ± 284 of 4 1.25None
Ovary120 ± 54 of 4 0.80None
Testis68 ± 24 of 4 0.40Down
Male accessory glands266 ± 24 of 4 1.70Up
Virgin spermatheca240 ± 34 of 4 1.57Up
Mated spermatheca263 ± 124 of 4 1.72Up
Adult carcass330 ± 144 of 4 2.20Up
Larval CNS79 ± 84 of 4 0.52Down
Larval Salivary gland104 ± 124 of 4 0.68Down
Larval midgut21 ± 10 of 4 0.14Down
Larval tubule16 ± 21 of 4 0.10Down
Larval hindgut622 ± 724 of 4 4.06Up
Larval fat body1404 ± 1114 of 4 9.20Up
Larval trachea885 ± 1404 of 4 5.78Up
Larval carcass757 ± 654 of 4 4.94Up
S2 cells (growing)862 ± 144 of 4 5.62Up
Whole fly153 ± 114 of 4

Looking for FBgn0015801. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime