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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015806 through 18771 annotations produced 1 hits



dS6 kinase (S6k):

Annotation Number : CG10539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015806
Gbrowse : chr3L:5792048-5804057 (-) // 100.0 //
Probeset : 1624244_at
Accessions : protein= NP_523941;, nucleotide= NM_079217;
Pathway : engulfment // inferred from mutant phenotype /// 0006914 // autophagy // inferred from mutant phenotype /// 0006974 //
Interpro : 0005840 // ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0015806.
Homophila reports that CG10539 is a close match (6e-11) to human gene MAPK10;PRKM10;JNK3 (NP_620447), a gene associated with Epileptic encephalopathy, Lennox-Gastaut type, 606369 (3).
BioGrid reports that CG10539 interacts with CG8843 CG6975 CG4006 CG1210 CG1210 CG1210 CG1210 CG5092 CG6147 CG6147 CG6147 CG6975 CG6975 .
TRiP has 5 RNAi stocks for FBgn0015806 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015806 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 ± 44 of 4 1.10None
Head166 ± 24 of 4 1.10None
Eye216 ± 94 of 4 1.43Up
Thoracicoabdominal ganglion158 ± 134 of 4 1.00None
Salivary gland122 ± 194 of 4 0.81None
Crop431 ± 154 of 4 2.90Up
Midgut507 ± 144 of 4 3.40Up
Tubule255 ± 144 of 4 1.70Up
Hindgut476 ± 254 of 4 3.20Up
Heart478 ± 244 of 4 3.17Up
Fat body697 ± 994 of 4 4.62Up
Ovary113 ± 14 of 4 0.70Down
Testis18 ± 24 of 4 0.10Down
Male accessory glands195 ± 54 of 4 1.30Up
Virgin spermatheca632 ± 234 of 4 4.18Up
Mated spermatheca593 ± 164 of 4 3.93Up
Adult carcass287 ± 404 of 4 1.90Up
Larval CNS187 ± 324 of 4 1.24None
Larval Salivary gland170 ± 134 of 4 1.13None
Larval midgut356 ± 154 of 4 2.36Up
Larval tubule264 ± 154 of 4 1.80Up
Larval hindgut383 ± 324 of 4 2.54Up
Larval fat body161 ± 84 of 4 1.10None
Larval trachea381 ± 244 of 4 2.52Up
Larval carcass158 ± 74 of 4 1.05None
S2 cells (growing)577 ± 94 of 4 3.82Up
Whole fly151 ± 104 of 4

Looking for FBgn0015806. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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