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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015808 through 18771 annotations produced 2 hits



/// sterol carrier protein X-related thiolase (CG17597 /// ScpX):

Annotation Number : CG17597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015808 /// FBgn0032715
Gbrowse : chr2L:18831720-18832999 (+) // 63.13 // /// chr2L:18829005-18831141 (-) // 100.0 //
Probeset : 1628744_s_at
Accessions : protein= NP_524715; /// NP_609912;, nucleotide= NM_079976; /// NM_136068;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from se
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activi
FlyMine data for FBgn0015808 /// FBgn0032715.
Homophila reports that CG17597 is a close match (1e-103) to human gene SCP2 (NP_001007099), a gene associated with Leukoencephalopathy with dystonia and motor neuropathy (3).
BioGrid reports that CG17597 interacts with CG6864 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 54 of 4 0.30Down
Head308 134 of 4 1.00None
Eye172 124 of 4 0.55Down
Thoracicoabdominal ganglion103 14 of 4 0.30Down
Salivary gland303 104 of 4 0.97None
Crop765 104 of 4 2.50Up
Midgut1497 194 of 4 4.80Up
Tubule1249 424 of 4 4.00Up
Hindgut573 54 of 4 1.80Up
Heart877 374 of 4 2.82Up
Fat body892 1234 of 4 2.87Up
Ovary178 34 of 4 0.60Down
Testis73 13 of 4 0.20Down
Male accessory glands225 54 of 4 0.70Down
Virgin spermatheca382 224 of 4 1.23None
Mated spermatheca316 244 of 4 1.02None
Adult carcass708 154 of 4 2.30Up
Larval CNS98 174 of 4 0.32Down
Larval Salivary gland269 204 of 4 0.86None
Larval midgut1666 684 of 4 5.35Up
Larval tubule1821 654 of 4 5.90Up
Larval hindgut322 254 of 4 1.04None
Larval fat body1485 1634 of 4 4.80Up
Larval trachea300 74 of 4 0.96None
Larval carcass227 104 of 4 0.73Down
S2 cells (growing)226 54 of 4 0.73Down
Whole fly311 194 of 4



sterol carrier protein X-related thiolase (ScpX):

Annotation Number : CG17320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015808
Gbrowse : chr2L:18831215-18833639 (+) // 100.0 // /// chr2L:18829097-18830462 (-) // 58.06 //
Probeset : 1630643_at
Accessions : protein= NP_524715;, nucleotide= NM_079976;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from se
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0015808.
BDGP gene expression has embryonic in situ data for ScpX: 16 pix of staining in 9 body parts.
Homophila reports that CG17320 is a close match (5e-12) to human gene HSD17B4 (NP_000405), a gene associated with D-bifunctional protein deficiency, 261515 (3).
BioGrid reports that CG17320 interacts with CG32486 .
VDRC has 3 RNAi stocks for FBgn0015808 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 64 of 4 0.60Down
Head423 164 of 4 1.70Up
Eye223 84 of 4 0.92None
Thoracicoabdominal ganglion155 24 of 4 0.60Down
Salivary gland266 94 of 4 1.09None
Crop993 224 of 4 4.10Up
Midgut385 64 of 4 1.60Up
Tubule711 374 of 4 2.90Up
Hindgut418 54 of 4 1.70Up
Heart608 204 of 4 2.50Up
Fat body1045 774 of 4 4.29Up
Ovary243 64 of 4 1.00None
Testis123 74 of 4 0.50Down
Male accessory glands184 74 of 4 0.80Down
Virgin spermatheca2304 974 of 4 9.46Up
Mated spermatheca1660 1324 of 4 6.81Up
Adult carcass606 164 of 4 2.50Up
Larval CNS201 94 of 4 0.83Down
Larval Salivary gland253 74 of 4 1.04None
Larval midgut664 144 of 4 2.73Up
Larval tubule434 134 of 4 1.80Up
Larval hindgut273 154 of 4 1.12None
Larval fat body1425 1584 of 4 5.80Up
Larval trachea430 64 of 4 1.77Up
Larval carcass252 124 of 4 1.04None
S2 cells (growing)283 34 of 4 1.16Up
Whole fly243 124 of 4

Looking for FBgn0015808. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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