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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015828 through 18771 annotations produced 1 hits



Transcription factor IIEalpha (TfIIEalpha):

Annotation Number : CG10415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015828
Gbrowse : chr3L:11675136-11676905 (+) // 100.0 //
Probeset : 1639648_at
Accessions : protein= NP_524026;, nucleotide= NM_079302;
Pathway : 0005673 // transcription factor TFIIE complex // inferred from sequence or structural similarity
Interpro : 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein
FlyMine data for FBgn0015828.
BDGP gene expression has embryonic in situ data for TfIIEalpha: 8 pix of staining in 1 body parts.
BioGrid reports that CG10415 interacts with CG1276 CG15293 .
VDRC has 3 RNAi stocks for FBgn0015828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 34 of 4 0.80Down
Head110 24 of 4 0.50Down
Eye121 54 of 4 0.53Down
Thoracicoabdominal ganglion145 34 of 4 0.60Down
Salivary gland158 124 of 4 0.69Down
Crop167 54 of 4 0.70Down
Midgut87 44 of 4 0.40Down
Tubule107 34 of 4 0.50Down
Hindgut119 34 of 4 0.50Down
Heart90 54 of 4 0.39Down
Fat body96 124 of 4 0.42Down
Ovary500 74 of 4 2.20Up
Testis123 64 of 4 0.50Down
Male accessory glands123 64 of 4 0.50Down
Virgin spermatheca126 54 of 4 0.55Down
Mated spermatheca112 44 of 4 0.49Down
Adult carcass105 34 of 4 0.50Down
Larval CNS189 124 of 4 0.82None
Larval Salivary gland172 64 of 4 0.75Down
Larval midgut93 34 of 4 0.41Down
Larval tubule126 24 of 4 0.50Down
Larval hindgut134 14 of 4 0.59Down
Larval fat body151 114 of 4 0.70Down
Larval trachea180 44 of 4 0.79None
Larval carcass139 64 of 4 0.61Down
S2 cells (growing)258 64 of 4 1.12None
Whole fly229 164 of 4

Looking for FBgn0015828. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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