FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0015838 through 18771 annotations produced 1 hits

Strabismus (Vang):

Annotation Number : CG8075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015838
Gbrowse : chr2R:4990748-4994301 (+) // 100.0 //
Probeset : 1635743_at
Accessions : protein= NP_477177;, nucleotide= NM_057829;
Pathway : 0005886 // plasma membrane // inferred from mutant phenotype /// 0016021 // integral to membrane // inferred from electr
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred fr
FlyMine data for FBgn0015838.
BDGP gene expression has embryonic in situ data for Vang: 4 pix of staining in 1 body parts.
Homophila reports that CG8075 is a close match (3e-97) to human gene STBM2;VANGL1 (NP_620409), a gene associated with Caudal regression syndrome, 600145 (3);Neural tube defects, 182940 (3).
BioGrid reports that CG8075 interacts with CG17697 CG17697 CG16993 CG11084 CG11084 CG11084 CG11084 CG11084 CG11084 CG2248 CG11895 CG11895 .
TRiP has 1 RNAi stocks for FBgn0015838 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015838 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	115 ± 4	4 of 4	1.10	None
Head	62 ± 3	4 of 4	0.60	Down
Eye	79 ± 2	4 of 4	0.74	Down
Thoracicoabdominal ganglion	98 ± 2	4 of 4	0.90	None
Salivary gland	77 ± 2	4 of 4	0.72	Down
Crop	100 ± 10	4 of 4	0.90	None
Midgut	56 ± 2	4 of 4	0.50	Down
Tubule	24 ± 0	4 of 4	0.20	Down
Hindgut	67 ± 5	4 of 4	0.60	Down
Heart	54 ± 3	4 of 4	0.50	Down
Fat body	71 ± 7	4 of 4	0.67	Down
Ovary	294 ± 6	4 of 4	2.70	Up
Testis	35 ± 1	4 of 4	0.30	Down
Male accessory glands	128 ± 6	4 of 4	1.20	None
Virgin spermatheca	95 ± 8	4 of 4	0.89	None
Mated spermatheca	107 ± 7	4 of 4	1.00	None
Adult carcass	46 ± 4	4 of 4	0.40	Down
Larval CNS	541 ± 36	4 of 4	5.04	Up
Larval Salivary gland	334 ± 8	4 of 4	3.12	Up
Larval midgut	73 ± 5	4 of 4	0.68	Down
Larval tubule	52 ± 1	4 of 4	0.50	Down
Larval hindgut	228 ± 6	4 of 4	2.12	Up
Larval fat body	110 ± 5	4 of 4	1.00	None
Larval trachea	336 ± 26	4 of 4	3.13	Up
Larval carcass	276 ± 4	4 of 4	2.57	Up
S2 cells (growing)	399 ± 7	4 of 4	3.72	Up
Whole fly	107 ± 6	4 of 4

Looking for FBgn0015838. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720