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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015904 through 18771 annotations produced 1 hits



chr3L:12573773-12589118 (+) // 100.0 // (iroquois):

Annotation Number : CG10571
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1631027_at
Accessions : protein= , nucleotide= NP_001163432; /// NP_524045;
Pathway : "0001745 // compound eye morphogenesis // inferred from mutant phenotype /// 0006350 // transcription // inferred from e
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG10571 interacts with CG7056 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 04 of 4 1.70Up
Head25 14 of 4 1.20None
Eye28 34 of 4 1.27None
Thoracicoabdominal ganglion71 24 of 4 3.20Up
Salivary gland19 30 of 4 0.86None
Crop10 41 of 4 0.50None
Midgut87 54 of 4 3.90Up
Tubule2 00 of 4 0.10Down
Hindgut7 20 of 4 0.30Down
Heart3 10 of 4 0.15Down
Fat body6 20 of 4 0.30Down
Ovary0 00 of 4 0.00Down
Testis3 10 of 4 0.20Down
Male accessory glands103 44 of 4 4.60Up
Virgin spermatheca10 10 of 4 0.49Down
Mated spermatheca12 20 of 4 0.55Down
Adult carcass20 10 of 4 0.90None
Larval CNS37 54 of 4 1.68Up
Larval Salivary gland4 10 of 4 0.18Down
Larval midgut64 34 of 4 2.88Up
Larval tubule3 00 of 4 0.20Down
Larval hindgut6 00 of 4 0.28Down
Larval fat body2 00 of 4 0.10Down
Larval trachea17 64 of 4 0.77None
Larval carcass100 144 of 4 4.50Up
S2 cells (growing)0 00 of 4 0.04Down
Whole fly22 11 of 4

Looking for FBgn0015904. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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