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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0015905 through 18771 annotations produced 1 hits

Star-recessive (ast):

Annotation Number : CG4426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015905
Gbrowse : chr2L:1077979-1080803 (+) // 99.78 //
Probeset : 1631268_at
Accessions : protein= NP_523451;, nucleotide= NM_078727;
FlyMine data for FBgn0015905.
BioGrid reports that CG4426 interacts with CG4336 CG4385 CG4385 CG4385 CG4385 CG10079 CG10079 CG4385 CG4385 .
VDRC has 2 RNAi stocks for FBgn0015905 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 04 of 4 0.50Down
Head23 14 of 4 0.40Down
Eye16 14 of 4 0.26Down
Thoracicoabdominal ganglion21 14 of 4 0.30Down
Salivary gland37 14 of 4 0.59Down
Crop41 24 of 4 0.60Down
Midgut42 24 of 4 0.70Down
Tubule24 14 of 4 0.40Down
Hindgut34 24 of 4 0.50Down
Heart15 04 of 4 0.24Down
Fat body33 54 of 4 0.51Down
Ovary112 34 of 4 1.80Up
Testis85 64 of 4 1.30Up
Male accessory glands56 64 of 4 0.90None
Virgin spermatheca24 14 of 4 0.38Down
Mated spermatheca37 44 of 4 0.58Down
Adult carcass20 33 of 4 0.30Down
Larval CNS56 44 of 4 0.88None
Larval Salivary gland53 24 of 4 0.83None
Larval midgut25 11 of 4 0.40Down
Larval tubule29 04 of 4 0.50Down
Larval hindgut34 34 of 4 0.53Down
Larval fat body28 53 of 4 0.40Down
Larval trachea40 54 of 4 0.63Down
Larval carcass37 24 of 4 0.59Down
S2 cells (growing)129 24 of 4 2.02Up
Whole fly64 34 of 4

Looking for FBgn0015905. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime