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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015924 through 18771 annotations produced 1 hits



croquemort (crq):

Annotation Number : CG4280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015924
Gbrowse : chr2L:448253-453023 (-) // 100.0 //
Probeset : 1639387_s_at
Accessions : protein= NP_787957; /// NP_787958;, nucleotide= NM_175943; /// NM_175944;
Pathway : engulfment // traceable author statement /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apop
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
FlyMine data for FBgn0015924.
BDGP gene expression has embryonic in situ data for crq: 20 pix of staining in 19 body parts.
Homophila reports that CG4280 is a close match (1e-43) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
TRiP has 2 RNAi stocks for FBgn0015924 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015924 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain280 84 of 4 1.70Up
Head478 414 of 4 2.80Up
Eye519 334 of 4 3.08Up
Thoracicoabdominal ganglion352 74 of 4 2.10Up
Salivary gland151 84 of 4 0.90None
Crop601 124 of 4 3.60Up
Midgut258 84 of 4 1.50Up
Tubule215 114 of 4 1.30Up
Hindgut433 114 of 4 2.60Up
Heart352 324 of 4 2.09Up
Fat body223 224 of 4 1.33Up
Ovary210 54 of 4 1.30None
Testis72 54 of 4 0.40Down
Male accessory glands87 54 of 4 0.50Down
Virgin spermatheca285 314 of 4 1.69Up
Mated spermatheca264 124 of 4 1.57Up
Adult carcass204 124 of 4 1.20None
Larval CNS150 284 of 4 0.89None
Larval Salivary gland120 84 of 4 0.72None
Larval midgut865 454 of 4 5.13Up
Larval tubule445 114 of 4 2.60Up
Larval hindgut364 274 of 4 2.16Up
Larval fat body180 174 of 4 1.10None
Larval trachea157 74 of 4 0.93None
Larval carcass205 114 of 4 1.22None
S2 cells (growing)817 454 of 4 4.85Up
Whole fly168 174 of 4

Looking for FBgn0015924. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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