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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016031 through 18771 annotations produced 1 hits



lamina ancestor (lama):

Annotation Number : CG10645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016031
Gbrowse : chr3L:5336714-5349023 (-) // 100.0 //
Probeset : 1640509_s_at
Accessions : protein= NP_523933; /// NP_729059; /// NP_729060;, nucleotide= NM_079209; /// NM_168115; /// NM_168116;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0016031.
BioGrid reports that CG10645 interacts with CG7170 CG5053 CG9986 .
TRiP has 1 RNAi stocks for FBgn0016031 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain199 ± 74 of 4 0.80Down
Head314 ± 74 of 4 1.20Up
Eye325 ± 144 of 4 1.27Up
Thoracicoabdominal ganglion128 ± 14 of 4 0.50Down
Salivary gland455 ± 134 of 4 1.77Up
Crop518 ± 174 of 4 2.00Up
Midgut199 ± 104 of 4 0.80Down
Tubule1962 ± 2334 of 4 7.60Up
Hindgut235 ± 64 of 4 0.90None
Heart375 ± 304 of 4 1.46Up
Fat body441 ± 274 of 4 1.72Up
Ovary301 ± 24 of 4 1.20Up
Testis69 ± 54 of 4 0.30Down
Male accessory glands136 ± 44 of 4 0.50Down
Virgin spermatheca561 ± 164 of 4 2.18Up
Mated spermatheca684 ± 514 of 4 2.66Up
Adult carcass486 ± 194 of 4 1.90Up
Larval CNS99 ± 224 of 4 0.39Down
Larval Salivary gland800 ± 944 of 4 3.11Up
Larval midgut602 ± 574 of 4 2.34Up
Larval tubule206 ± 134 of 4 0.80Down
Larval hindgut164 ± 64 of 4 0.64Down
Larval fat body419 ± 454 of 4 1.60Up
Larval trachea95 ± 104 of 4 0.37Down
Larval carcass261 ± 644 of 4 1.02None
S2 cells (growing)295 ± 54 of 4 1.15Up
Whole fly257 ± 74 of 4

Looking for FBgn0016031. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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