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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016036 through 18771 annotations produced 1 hits



meiotic P22 (mei-P22):

Annotation Number : CG14827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016036
Gbrowse : chr3L:7237487-7238483 (+) // 100.0 //
Probeset : 1633298_at
Accessions : protein= NP_523956;, nucleotide= NM_079232;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0016036.
BioGrid reports that CG14827 interacts with CG17870 CG3325 .
VDRC has 1 RNAi stocks for FBgn0016036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head3 10 of 4 0.90None
Eye1 00 of 4 0.39None
Thoracicoabdominal ganglion2 00 of 4 0.50None
Salivary gland17 50 of 4 4.49None
Crop6 10 of 4 1.70None
Midgut2 00 of 4 0.60None
Tubule4 00 of 4 1.10Up
Hindgut5 10 of 4 1.50None
Heart2 00 of 4 0.58None
Fat body6 10 of 4 1.59None
Ovary6 10 of 4 1.70None
Testis10 02 of 4 2.50Up
Male accessory glands4 20 of 4 1.10None
Virgin spermatheca1 00 of 4 0.43None
Mated spermatheca3 00 of 4 0.80None
Adult carcass6 10 of 4 1.70None
Larval CNS1 10 of 4 0.38None
Larval Salivary gland3 00 of 4 0.80None
Larval midgut4 10 of 4 1.09None
Larval tubule6 10 of 4 1.60None
Larval hindgut5 10 of 4 1.28None
Larval fat body9 50 of 4 2.40None
Larval trachea1 10 of 4 0.46None
Larval carcass3 10 of 4 0.78None
S2 cells (growing)4 00 of 4 1.25None
Whole fly4 10 of 4

Looking for FBgn0016036. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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