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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016047 through 18771 annotations produced 2 hits



no mechanoreceptor potential A (nompA):

Annotation Number : CG13207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016047
Gbrowse : chr2R:7197951-7206180 (-) // 100.0 //
Probeset : 1641377_a_at
Accessions : protein= NP_001163117; /// NP_524831; /// NP_725030; /// NP_725031; /// NP_995818;, nucleotide= NM_001169646; /// NM_080092; /// NM_165821; /// NM_165822; /// NM_206096;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // non-traceable autho
Interpro : 0004872 // receptor activity // inferred from electronic annotation
FlyMine data for FBgn0016047.
BDGP gene expression has embryonic in situ data for nompA: 23 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0016047 available for purchase.
VDRC has 1 RNAi stocks for FBgn0016047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head17 12 of 4 1.50Up
Eye4 10 of 4 0.39Down
Thoracicoabdominal ganglion4 10 of 4 0.40Down
Salivary gland8 30 of 4 0.68None
Crop7 20 of 4 0.60None
Midgut6 20 of 4 0.60None
Tubule7 00 of 4 0.60Down
Hindgut5 20 of 4 0.50None
Heart8 21 of 4 0.71None
Fat body23 33 of 4 1.99Up
Ovary2 10 of 4 0.20Down
Testis2 10 of 4 0.20Down
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca10 00 of 4 0.90None
Mated spermatheca10 31 of 4 0.93None
Adult carcass29 42 of 4 2.50Up
Larval CNS4 10 of 4 0.34Down
Larval Salivary gland5 20 of 4 0.45None
Larval midgut5 10 of 4 0.46Down
Larval tubule13 10 of 4 1.10None
Larval hindgut5 10 of 4 0.49Down
Larval fat body9 20 of 4 0.80None
Larval trachea5 50 of 4 0.46None
Larval carcass10 10 of 4 0.92None
S2 cells (growing)3 10 of 4 0.26Down
Whole fly11 10 of 4



no mechanoreceptor potential A (nompA):

Annotation Number : CG13207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016047
Gbrowse : chr2R:7197951-7206880 (-) // 100.0 //
Probeset : 1632378_at
Accessions : protein= NP_001163117; /// NP_524831; /// NP_725030; /// NP_725031; /// NP_995818;, nucleotide= NM_001169646; /// NM_080092; /// NM_165821; /// NM_165822; /// NM_206096;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // non-traceable autho
Interpro : 0004872 // receptor activity // inferred from electronic annotation
FlyMine data for FBgn0016047.
BDGP gene expression has embryonic in situ data for nompA: 23 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0016047 available for purchase.
VDRC has 1 RNAi stocks for FBgn0016047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.70None
Head14 20 of 4 1.60None
Eye77 84 of 4 9.01Up
Thoracicoabdominal ganglion8 00 of 4 1.00None
Salivary gland28 20 of 4 3.25Up
Crop8 10 of 4 1.00None
Midgut14 20 of 4 1.70None
Tubule12 10 of 4 1.50Up
Hindgut6 10 of 4 0.80None
Heart121 194 of 414.08Up
Fat body49 163 of 4 5.77Up
Ovary5 00 of 4 0.70None
Testis3 10 of 4 0.50None
Male accessory glands21 31 of 4 2.50Up
Virgin spermatheca88 64 of 410.29Up
Mated spermatheca76 84 of 4 8.85Up
Adult carcass26 20 of 4 3.10Up
Larval CNS3 10 of 4 0.39None
Larval Salivary gland28 60 of 4 3.30Up
Larval midgut21 30 of 4 2.49Up
Larval tubule68 54 of 4 7.90Up
Larval hindgut9 10 of 4 1.14None
Larval fat body42 50 of 4 5.00Up
Larval trachea9 30 of 4 1.08None
Larval carcass4 10 of 4 0.48None
S2 cells (growing)3 00 of 4 0.46None
Whole fly8 30 of 4

Looking for FBgn0016047. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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