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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016080 through 18771 annotations produced 1 hits



transcript g (xmas-1):

Annotation Number : CG32561
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016080
Gbrowse : chrX:17045792-17048513 (-) // 100.0 //
Probeset : 1627874_at
Accessions : protein= NP_524773;, nucleotide= NM_080034;
FlyMine data for FBgn0016080.
VDRC has 3 RNAi stocks for FBgn0016080 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 10 of 4 0.30Down
Head10 ± 10 of 4 0.30Down
Eye6 ± 10 of 4 0.19Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland20 ± 40 of 4 0.64None
Crop7 ± 10 of 4 0.20Down
Midgut17 ± 10 of 4 0.50Down
Tubule6 ± 00 of 4 0.20Down
Hindgut6 ± 20 of 4 0.20Down
Heart6 ± 10 of 4 0.21Down
Fat body9 ± 50 of 4 0.28Down
Ovary5 ± 10 of 4 0.20Down
Testis266 ± 84 of 4 8.20Up
Male accessory glands18 ± 10 of 4 0.60Down
Virgin spermatheca4 ± 10 of 4 0.14Down
Mated spermatheca8 ± 20 of 4 0.24Down
Adult carcass11 ± 40 of 4 0.30Down
Larval CNS19 ± 10 of 4 0.58Down
Larval Salivary gland17 ± 10 of 4 0.53Down
Larval midgut6 ± 20 of 4 0.20Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut13 ± 10 of 4 0.42Down
Larval fat body34 ± 121 of 4 1.10None
Larval trachea10 ± 50 of 4 0.32Down
Larval carcass14 ± 20 of 4 0.44Down
S2 cells (growing)69 ± 34 of 4 2.14Up
Whole fly32 ± 24 of 4

Looking for FBgn0016080. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime