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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016123 through 18771 annotations produced 1 hits



Alkaline phosphatase (Aph-4):

Annotation Number : CG1462
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016123
Gbrowse : chr3R:26874653-26878268 (+) // 100.0 //
Probeset : 1636888_a_at
Accessions : protein= NP_524601; /// NP_733413;, nucleotide= NM_079862; /// NM_170534;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0016123.
Homophila reports that CG1462 is a close match (3e-83) to human gene (NP_001623), a gene associated with .
TRiP has 2 RNAi stocks for FBgn0016123 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016123 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain313 54 of 4 0.30Down
Head297 174 of 4 0.30Down
Eye638 344 of 4 0.69Down
Thoracicoabdominal ganglion634 224 of 4 0.70Down
Salivary gland15 50 of 4 0.02Down
Crop11 02 of 4 0.00Down
Midgut17 32 of 4 0.00Down
Tubule7619 2574 of 4 8.30Up
Hindgut550 424 of 4 0.60Down
Heart25 54 of 4 0.03Down
Fat body30 362 of 4 0.03Down
Ovary173 44 of 4 0.20Down
Testis93 54 of 4 0.10Down
Male accessory glands3379 1384 of 4 3.70Up
Virgin spermatheca130 174 of 4 0.14Down
Mated spermatheca125 174 of 4 0.14Down
Adult carcass152 134 of 4 0.20Down
Larval CNS51 84 of 4 0.06Down
Larval Salivary gland8 20 of 4 0.01Down
Larval midgut22 44 of 4 0.02Down
Larval tubule6173 1314 of 4 6.70Up
Larval hindgut153 484 of 4 0.17Down
Larval fat body23 34 of 4 0.00Down
Larval trachea42 154 of 4 0.05Down
Larval carcass22 13 of 4 0.02Down
S2 cells (growing)13 24 of 4 0.01Down
Whole fly919 414 of 4

Looking for FBgn0016123. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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