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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016650 through 18771 annotations produced 1 hits



Fsh-Tsh-like receptor (Fsh):

Annotation Number : CG7665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016650
Gbrowse : chr3R:13551247-13558952 (+) // 100.0 //
Probeset : 1631104_s_at
Accessions : protein= NP_524393; /// NP_732265;, nucleotide= NM_079669; /// NM_169777;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0016650.
BDGP gene expression has embryonic in situ data for Fsh: 16 pix of staining in 5 body parts.
Homophila reports that CG7665 is a close match (3e-15) to human gene CBBM;CBP;OPN1LW;RCP (NP_064445), a gene associated with Blue-cone monochromacy, 303700 (3);Colorblindness, protan (3).
TRiP has 1 RNAi stocks for FBgn0016650 available for purchase.
VDRC has 2 RNAi stocks for FBgn0016650 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 34 of 4 2.50Up
Head77 34 of 4 2.60Up
Eye72 54 of 4 2.45Up
Thoracicoabdominal ganglion30 14 of 4 1.00None
Salivary gland517 84 of 417.61Up
Crop26 24 of 4 0.90None
Midgut12 12 of 4 0.40Down
Tubule75 74 of 4 2.60Up
Hindgut986 64 of 433.60Up
Heart10 04 of 4 0.35Down
Fat body11 53 of 4 0.40Down
Ovary4 12 of 4 0.10Down
Testis39 34 of 4 1.30None
Male accessory glands20 24 of 4 0.70Down
Virgin spermatheca17 04 of 4 0.59Down
Mated spermatheca19 14 of 4 0.65Down
Adult carcass18 14 of 4 0.60Down
Larval CNS9 24 of 4 0.32Down
Larval Salivary gland60 24 of 4 2.07Up
Larval midgut15 23 of 4 0.53Down
Larval tubule68 44 of 4 2.30Up
Larval hindgut750 554 of 425.56Up
Larval fat body7 31 of 4 0.30Down
Larval trachea9 41 of 4 0.31Down
Larval carcass54 74 of 4 1.84Up
S2 cells (growing)6 21 of 4 0.23Down
Whole fly29 14 of 4

Looking for FBgn0016650. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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