Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016660 through 18771 annotations produced 1 hits



neuromancer1 (H15):

Annotation Number : CG6604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016660
Gbrowse : chr2L:5404341-5415928 (+) // 100.0 //
Probeset : 1625535_at
Accessions : protein= NP_608926;, nucleotide= NM_135082;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0016660.
Homophila reports that CG6604 is a close match (1e-31) to human gene TBET;TBX21 (NP_037483), a gene associated with Asthma and nasal polyps, 208550 (3);{Asthma, aspirin-induced, susceptibility to}, 208550 (3).
VDRC has 5 RNAi stocks for FBgn0016660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 20 of 4 2.00None
Head7 21 of 4 2.00None
Eye1 00 of 4 0.42None
Thoracicoabdominal ganglion19 22 of 4 5.20Up
Salivary gland5 10 of 4 1.48None
Crop2 00 of 4 0.70None
Midgut5 10 of 4 1.50None
Tubule6 00 of 4 1.70Up
Hindgut4 10 of 4 1.20None
Heart78 124 of 421.15Up
Fat body8 30 of 4 2.33None
Ovary3 10 of 4 1.00None
Testis8 20 of 4 2.30None
Male accessory glands3 00 of 4 1.00None
Virgin spermatheca6 10 of 4 1.71None
Mated spermatheca3 00 of 4 0.92None
Adult carcass8 10 of 4 2.20None
Larval CNS4 30 of 4 1.32None
Larval Salivary gland6 10 of 4 1.64None
Larval midgut5 10 of 4 1.48None
Larval tubule6 20 of 4 1.80None
Larval hindgut3 10 of 4 0.83None
Larval fat body9 30 of 4 2.60None
Larval trachea3 20 of 4 0.89None
Larval carcass6 00 of 4 1.61None
S2 cells (growing)3 00 of 4 1.01None
Whole fly3 10 of 4

Looking for FBgn0016660. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime