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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016672 through 18771 annotations produced 1 hits



chr3R:9784472-9786196 (+) // 100.0 // (inositol polyphosphate 1-phosphatase):

Annotation Number : CG3028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626217_at
Accessions : protein= , nucleotide= NP_731872;
Pathway : 0007268 // synaptic transmission // inferred from mutant phenotype /// 0046855 // inositol phosphate dephosphorylation /
FlyMine data for full length.
BioGrid reports that CG3028 interacts with CG32635 CG5203 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain629 ± 74 of 4 3.60Up
Head866 ± 144 of 4 5.00Up
Eye3461 ± 1154 of 419.83Up
Thoracicoabdominal ganglion657 ± 284 of 4 3.80Up
Salivary gland22 ± 61 of 4 0.13Down
Crop442 ± 104 of 4 2.50Up
Midgut122 ± 34 of 4 0.70Down
Tubule129 ± 104 of 4 0.70Down
Hindgut219 ± 14 of 4 1.30Up
Heart134 ± 34 of 4 0.77Down
Fat body68 ± 24 of 4 0.39Down
Ovary244 ± 74 of 4 1.40Up
Testis42 ± 14 of 4 0.20Down
Male accessory glands63 ± 54 of 4 0.40Down
Virgin spermatheca74 ± 44 of 4 0.43Down
Mated spermatheca84 ± 34 of 4 0.49Down
Adult carcass99 ± 74 of 4 0.60Down
Larval CNS231 ± 134 of 4 1.33Up
Larval Salivary gland11 ± 00 of 4 0.07Down
Larval midgut123 ± 64 of 4 0.71Down
Larval tubule101 ± 64 of 4 0.60Down
Larval hindgut321 ± 134 of 4 1.84Up
Larval fat body54 ± 44 of 4 0.30Down
Larval trachea124 ± 764 of 4 0.71None
Larval carcass64 ± 64 of 4 0.37Down
S2 cells (growing)88 ± 14 of 4 0.51Down
Whole fly174 ± 64 of 4

Looking for FBgn0016672. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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