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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016675 through 18771 annotations produced 1 hits



galactin (Lectin-galC1):

Annotation Number : CG9976
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016675
Gbrowse : chr2L:19417446-19418274 (+) // 99.48 //
Probeset : 1633378_at
Accessions : protein= NP_477200;, nucleotide= NM_057852;
Interpro : 0004872 // receptor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0016675.
VDRC has 3 RNAi stocks for FBgn0016675 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye5 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion4 ± 30 of 4 0.00Down
Salivary gland6 ± 10 of 4 0.05Down
Crop6 ± 30 of 4 0.00Down
Midgut8 ± 11 of 4 0.10Down
Tubule10 ± 30 of 4 0.10Down
Hindgut6 ± 10 of 4 0.00Down
Heart1978 ± 2244 of 414.08Up
Fat body1259 ± 1374 of 4 8.96Up
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 10 of 4 0.05Down
Mated spermatheca10 ± 10 of 4 0.07Down
Adult carcass1139 ± 1024 of 4 8.10Up
Larval CNS5 ± 20 of 4 0.04Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body5 ± 30 of 4 0.00Down
Larval trachea43 ± 791 of 4 0.31None
Larval carcass1919 ± 684 of 413.66Up
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly140 ± 184 of 4

Looking for FBgn0016675. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime