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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016687 through 18771 annotations produced 1 hits



pyrophosphatase (Nurf-38):

Annotation Number : CG4634
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016687
Gbrowse : chr2R:20446486-20448610 (-) // 100.0 //
Probeset : 1637982_at
Accessions : protein= NP_001137758; /// NP_523849;, nucleotide= NM_001144286; /// NM_079125;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity
FlyMine data for FBgn0016687.
BDGP gene expression has embryonic in situ data for Nurf-38: 4 pix of staining in 1 body parts.
BioGrid reports that CG4634 interacts with CG5991 CG6843 CG7399 CG8280 CG9696 CG4236 CG8625 CG32346 .
TRiP has 2 RNAi stocks for FBgn0016687 available for purchase.
VDRC has 2 RNAi stocks for FBgn0016687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain658 164 of 4 0.60Down
Head1330 624 of 4 1.20Up
Eye1115 384 of 4 0.99None
Thoracicoabdominal ganglion700 274 of 4 0.60Down
Salivary gland1682 434 of 4 1.49Up
Crop1223 384 of 4 1.10None
Midgut1447 194 of 4 1.30Up
Tubule1253 364 of 4 1.10Up
Hindgut1161 154 of 4 1.00None
Heart2170 1064 of 4 1.92Up
Fat body2232 984 of 4 1.98Up
Ovary1071 64 of 4 0.90None
Testis303 174 of 4 0.30Down
Male accessory glands1384 434 of 4 1.20Up
Virgin spermatheca2105 674 of 4 1.86Up
Mated spermatheca1895 224 of 4 1.68Up
Adult carcass2036 374 of 4 1.80Up
Larval CNS1078 604 of 4 0.96None
Larval Salivary gland1993 354 of 4 1.76Up
Larval midgut1514 984 of 4 1.34Up
Larval tubule478 274 of 4 0.40Down
Larval hindgut1213 404 of 4 1.07None
Larval fat body812 594 of 4 0.70Down
Larval trachea1406 1154 of 4 1.25Up
Larval carcass956 654 of 4 0.85None
S2 cells (growing)1191 254 of 4 1.06None
Whole fly1129 484 of 4

Looking for FBgn0016687. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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