FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0016693 through 18771 annotations produced 1 hits

EH domain containing protein (Past1):

Annotation Number : CG6148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016693
Gbrowse : chr3R:8523043-8529855 (+) // 99.15 //
Probeset : 1638011_a_at
Accessions : protein= NP_524332; /// NP_731737;, nucleotide= NM_079608; /// NM_169478;
Interpro : 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from se
FlyMine data for FBgn0016693.
BDGP gene expression has embryonic in situ data for Past1: 12 pix of staining in 10 body parts.
TRiP has 1 RNAi stocks for FBgn0016693 available for purchase.
VDRC has 2 RNAi stocks for FBgn0016693 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	369 ± 11	4 of 4	1.30	None
Head	243 ± 12	4 of 4	0.80	None
Eye	128 ± 4	4 of 4	0.44	Down
Thoracicoabdominal ganglion	875 ± 19	4 of 4	3.00	Up
Salivary gland	510 ± 49	4 of 4	1.75	Up
Crop	519 ± 9	4 of 4	1.80	Up
Midgut	417 ± 13	4 of 4	1.40	Up
Tubule	468 ± 15	4 of 4	1.60	Up
Hindgut	531 ± 10	4 of 4	1.80	Up
Heart	446 ± 33	4 of 4	1.53	Up
Fat body	429 ± 61	4 of 4	1.47	Up
Ovary	221 ± 5	4 of 4	0.80	Down
Testis	979 ± 22	4 of 4	3.40	Up
Male accessory glands	184 ± 8	4 of 4	0.60	Down
Virgin spermatheca	237 ± 23	4 of 4	0.81	None
Mated spermatheca	303 ± 6	4 of 4	1.04	None
Adult carcass	378 ± 49	4 of 4	1.30	None
Larval CNS	207 ± 26	4 of 4	0.71	Down
Larval Salivary gland	1155 ± 88	4 of 4	3.96	Up
Larval midgut	530 ± 36	4 of 4	1.82	Up
Larval tubule	319 ± 8	4 of 4	1.10	None
Larval hindgut	880 ± 38	4 of 4	3.02	Up
Larval fat body	286 ± 51	4 of 4	1.00	None
Larval trachea	235 ± 22	4 of 4	0.81	Down
Larval carcass	417 ± 16	4 of 4	1.43	Up
S2 cells (growing)	1265 ± 37	4 of 4	4.34	Up
Whole fly	291 ± 18	4 of 4

Looking for FBgn0016693. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720