Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016698 through 18771 annotations produced 1 hits



Phosphotyrosyl phosphatase activator (Ptpa):

Annotation Number : CG3289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016698
Gbrowse : chr2L:3377007-3378586 (+) // 100.0 //
Probeset : 1629241_at
Accessions : protein= NP_523466;, nucleotide= NM_078742;
Interpro : 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008160 // protein tyrosine phosphatase ac
FlyMine data for FBgn0016698.
BDGP gene expression has embryonic in situ data for Ptpa: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0016698 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain196 44 of 4 2.00Up
Head110 24 of 4 1.10None
Eye104 34 of 4 1.04None
Thoracicoabdominal ganglion216 64 of 4 2.20Up
Salivary gland150 134 of 4 1.51Up
Crop152 54 of 4 1.50Up
Midgut53 14 of 4 0.50Down
Tubule72 34 of 4 0.70Down
Hindgut142 64 of 4 1.40Up
Heart87 54 of 4 0.88None
Fat body73 104 of 4 0.74Down
Ovary167 44 of 4 1.70Up
Testis89 24 of 4 0.90None
Male accessory glands56 44 of 4 0.60Down
Virgin spermatheca60 44 of 4 0.61Down
Mated spermatheca62 34 of 4 0.62Down
Adult carcass120 24 of 4 1.20None
Larval CNS160 144 of 4 1.61Up
Larval Salivary gland90 54 of 4 0.90None
Larval midgut54 24 of 4 0.54Down
Larval tubule90 34 of 4 0.90None
Larval hindgut99 84 of 4 1.00None
Larval fat body112 44 of 4 1.10None
Larval trachea126 194 of 4 1.26None
Larval carcass68 34 of 4 0.68Down
S2 cells (growing)135 24 of 4 1.36Up
Whole fly99 74 of 4

Looking for FBgn0016698. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime