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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016715 through 18771 annotations produced 1 hits



rhythmically expressed gene 2 (Reg-2):

Annotation Number : CG3200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016715
Gbrowse : chr3L:605164-606558 (-) // 100.0 //
Probeset : 1641722_at
Accessions : protein= NP_612043;, nucleotide= NM_138199;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008967 // phosphoglycolate phosphatase activit
FlyMine data for FBgn0016715.
VDRC has 2 RNAi stocks for FBgn0016715 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 14 of 4 0.10Down
Head303 194 of 4 2.70Up
Eye238 144 of 4 2.15Up
Thoracicoabdominal ganglion11 13 of 4 0.10Down
Salivary gland11 40 of 4 0.10Down
Crop523 204 of 4 4.70Up
Midgut501 34 of 4 4.50Up
Tubule309 414 of 4 2.80Up
Hindgut240 24 of 4 2.20Up
Heart376 544 of 4 3.41Up
Fat body868 1774 of 4 7.85Up
Ovary20 24 of 4 0.20Down
Testis27 24 of 4 0.20Down
Male accessory glands729 354 of 4 6.60Up
Virgin spermatheca919 474 of 4 8.31Up
Mated spermatheca542 304 of 4 4.90Up
Adult carcass352 274 of 4 3.20Up
Larval CNS3 10 of 4 0.03Down
Larval Salivary gland59 54 of 4 0.54Down
Larval midgut173 64 of 4 1.57Up
Larval tubule469 114 of 4 4.20Up
Larval hindgut83 54 of 4 0.76Down
Larval fat body3609 4274 of 432.60Up
Larval trachea73 194 of 4 0.66Down
Larval carcass37 54 of 4 0.34Down
S2 cells (growing)88 14 of 4 0.80Down
Whole fly110 64 of 4

Looking for FBgn0016715. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime