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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016756 through 18771 annotations produced 1 hits



Ubiquitin-specific protease 64E (Ubp64E):

Annotation Number : CG5486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016756
Gbrowse : chr3L:5746085-5754602 (+) // 100.0 //
Probeset : 1624727_s_at
Accessions : protein= NP_523937; /// NP_729087; /// NP_996001;, nucleotide= NM_079213; /// NM_168129; /// NM_206279;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesteras
FlyMine data for FBgn0016756.
BDGP gene expression has embryonic in situ data for Ubp64E: 12 pix of staining in 8 body parts.
Homophila reports that CG5486 is a close match (3e-33) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
BioGrid reports that CG5486 interacts with CG7484 CG4354 .
TRiP has 1 RNAi stocks for FBgn0016756 available for purchase.
VDRC has 2 RNAi stocks for FBgn0016756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain293 34 of 4 1.20Up
Head220 144 of 4 0.90None
Eye251 54 of 4 1.07None
Thoracicoabdominal ganglion306 54 of 4 1.30Up
Salivary gland298 84 of 4 1.26Up
Crop974 374 of 4 4.10Up
Midgut238 74 of 4 1.00None
Tubule334 154 of 4 1.40Up
Hindgut514 134 of 4 2.20Up
Heart433 334 of 4 1.83Up
Fat body144 114 of 4 0.61Down
Ovary195 124 of 4 0.80Down
Testis752 184 of 4 3.20Up
Male accessory glands367 134 of 4 1.60Up
Virgin spermatheca161 64 of 4 0.68Down
Mated spermatheca210 104 of 4 0.89None
Adult carcass349 134 of 4 1.50Up
Larval CNS252 444 of 4 1.07None
Larval Salivary gland316 154 of 4 1.34Up
Larval midgut238 164 of 4 1.01None
Larval tubule234 94 of 4 1.00None
Larval hindgut458 274 of 4 1.94Up
Larval fat body156 174 of 4 0.70Down
Larval trachea302 464 of 4 1.28None
Larval carcass620 64 of 4 2.63Up
S2 cells (growing)285 54 of 4 1.21Up
Whole fly236 84 of 4

Looking for FBgn0016756. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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