FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0016794 through 18771 annotations produced 1 hits

Suppressor of sevenless-S11 (dos):

Annotation Number : CG1044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016794
Gbrowse : chr3L:2589401-2595590 (+) // 100.0 //
Probeset : 1640395_a_at
Accessions : protein= NP_523890; /// NP_728757;, nucleotide= NM_079166; /// NM_167956;
Pathway : embryo // traceable author statement /// 0019730 // antimicrobial humoral response // inferred from mutant phenotype //
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
FlyMine data for FBgn0016794.
BioGrid reports that CG1044 interacts with CG18777 CG3954 CG3954 CG3954 CG3954 CG3954 CG3954 CG18085 CG18085 CG18085 CG18085 CG18085 CG18085 CG18085 CG18085 CG18085 CG18085 CG1389 CG7508 .
TRiP has 1 RNAi stocks for FBgn0016794 available for purchase.
VDRC has 1 RNAi stocks for FBgn0016794 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	147 ± 5	4 of 4	0.60	Down
Head	127 ± 5	4 of 4	0.50	Down
Eye	118 ± 2	4 of 4	0.47	Down
Thoracicoabdominal ganglion	143 ± 2	4 of 4	0.60	Down
Salivary gland	74 ± 4	4 of 4	0.30	Down
Crop	185 ± 18	4 of 4	0.70	Down
Midgut	115 ± 8	4 of 4	0.50	Down
Tubule	85 ± 5	4 of 4	0.30	Down
Hindgut	104 ± 5	4 of 4	0.40	Down
Heart	99 ± 7	4 of 4	0.39	Down
Fat body	163 ± 50	4 of 4	0.65	Down
Ovary	588 ± 14	4 of 4	2.30	Up
Testis	40 ± 3	4 of 4	0.20	Down
Male accessory glands	92 ± 7	4 of 4	0.40	Down
Virgin spermatheca	190 ± 18	4 of 4	0.76	None
Mated spermatheca	219 ± 27	4 of 4	0.87	None
Adult carcass	107 ± 1	4 of 4	0.40	Down
Larval CNS	169 ± 29	4 of 4	0.67	Down
Larval Salivary gland	25 ± 3	4 of 4	0.10	Down
Larval midgut	147 ± 7	4 of 4	0.58	Down
Larval tubule	33 ± 1	4 of 4	0.10	Down
Larval hindgut	114 ± 14	4 of 4	0.45	Down
Larval fat body	71 ± 6	4 of 4	0.30	Down
Larval trachea	154 ± 24	4 of 4	0.61	Down
Larval carcass	94 ± 11	4 of 4	0.38	Down
S2 cells (growing)	615 ± 12	4 of 4	2.44	Up
Whole fly	251 ± 19	4 of 4

Looking for FBgn0016794. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720