FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0016797 through 18771 annotations produced 4 hits

D-frizzled2 (fz2):

Annotation Number : S.C3L002408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016797
Gbrowse : chr3L:19190506-19204823 (-) // 100.0 //
Probeset : 1623567_at
Accessions : protein= NP_001097643; /// NP_001137971; /// NP_524155; /// NP_730389;, nucleotide= NM_001104173; /// NM_001144499; /// NM_079431; /// NM_168787;
Pathway : 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0016797.
TRiP has 3 RNAi stocks for FBgn0016797 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016797 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 0	0 of 4	1.80	None
Head	5 ± 1	1 of 4	1.20	None
Eye	2 ± 0	0 of 4	0.60	None
Thoracicoabdominal ganglion	5 ± 0	1 of 4	1.20	None
Salivary gland	7 ± 1	0 of 4	1.77	None
Crop	5 ± 0	0 of 4	1.20	None
Midgut	9 ± 2	0 of 4	2.20	None
Tubule	3 ± 0	0 of 4	0.90	None
Hindgut	4 ± 1	0 of 4	1.10	None
Heart	3 ± 1	0 of 4	0.89	None
Fat body	4 ± 3	0 of 4	1.08	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	3 ± 0	0 of 4	0.80	None
Male accessory glands	6 ± 1	1 of 4	1.60	None
Virgin spermatheca	2 ± 0	0 of 4	0.58	None
Mated spermatheca	5 ± 0	0 of 4	1.25	None
Adult carcass	7 ± 3	1 of 4	1.80	None
Larval CNS	4 ± 2	1 of 4	1.16	None
Larval Salivary gland	6 ± 1	1 of 4	1.51	None
Larval midgut	9 ± 0	0 of 4	2.12	Up
Larval tubule	7 ± 1	1 of 4	1.80	None
Larval hindgut	3 ± 0	0 of 4	0.86	None
Larval fat body	6 ± 2	0 of 4	1.60	None
Larval trachea	3 ± 2	0 of 4	0.85	None
Larval carcass	2 ± 1	0 of 4	0.65	None
S2 cells (growing)	3 ± 0	0 of 4	0.89	None
Whole fly	4 ± 1	0 of 4

D-frizzled2 (fz2):

Annotation Number : S.C3L002407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016797
Gbrowse : chr3L:19139450-19162861 (-) // 100.0 //
Probeset : 1636701_at
Accessions : protein= NP_001097643; /// NP_001137971; /// NP_524155; /// NP_730389;, nucleotide= NM_001104173; /// NM_001144499; /// NM_079431; /// NM_168787;
Pathway : 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0016797.
TRiP has 3 RNAi stocks for FBgn0016797 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016797 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	1.70	None
Head	3 ± 0	0 of 4	1.20	None
Eye	3 ± 1	2 of 4	1.63	None
Thoracicoabdominal ganglion	5 ± 1	0 of 4	2.10	None
Salivary gland	2 ± 1	0 of 4	0.93	None
Crop	3 ± 1	0 of 4	1.60	None
Midgut	4 ± 1	0 of 4	1.90	None
Tubule	2 ± 0	0 of 4	0.80	None
Hindgut	3 ± 1	1 of 4	1.40	None
Heart	2 ± 0	0 of 4	1.07	None
Fat body	5 ± 0	1 of 4	2.26	Up
Ovary	2 ± 0	0 of 4	1.00	None
Testis	1 ± 0	0 of 4	0.70	None
Male accessory glands	4 ± 1	0 of 4	1.70	None
Virgin spermatheca	5 ± 1	1 of 4	2.37	None
Mated spermatheca	4 ± 0	0 of 4	1.92	None
Adult carcass	5 ± 2	0 of 4	2.20	None
Larval CNS	3 ± 1	1 of 4	1.63	None
Larval Salivary gland	3 ± 1	0 of 4	1.58	None
Larval midgut	3 ± 0	0 of 4	1.26	None
Larval tubule	3 ± 1	0 of 4	1.50	None
Larval hindgut	2 ± 0	0 of 4	0.94	None
Larval fat body	3 ± 2	0 of 4	1.20	None
Larval trachea	3 ± 0	0 of 4	1.59	None
Larval carcass	2 ± 0	0 of 4	1.16	None
S2 cells (growing)	2 ± 0	0 of 4	1.21	None
Whole fly	2 ± 0	0 of 4

D-frizzled2 (fz2):

Annotation Number : CG9739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016797
Gbrowse : chr3L:19135997-19163726 (-) // 100.0 //
Probeset : 1635583_s_at
Accessions : protein= NP_001097643; /// NP_001137971; /// NP_524155; /// NP_730389;, nucleotide= NM_001104173; /// NM_001144499; /// NM_079431; /// NM_168787;
Pathway : 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0016797.
Homophila reports that CG9739 is a close match (8e-32) to human gene FRZB;FRZB1;SRFP3 (NP_001454), a gene associated with {Osteoarthritis of hip, female-specific, susceptibility to}, 165720 (3).
BioGrid reports that CG9739 interacts with CG9975 CG11579 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG17697 CG8118 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4974 CG4974 .
TRiP has 3 RNAi stocks for FBgn0016797 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016797 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	338 ± 8	4 of 4	3.10	Up
Head	349 ± 23	4 of 4	3.20	Up
Eye	453 ± 20	4 of 4	4.12	Up
Thoracicoabdominal ganglion	355 ± 14	4 of 4	3.20	Up
Salivary gland	192 ± 22	4 of 4	1.75	Up
Crop	177 ± 5	4 of 4	1.60	Up
Midgut	234 ± 4	4 of 4	2.10	Up
Tubule	232 ± 9	4 of 4	2.10	Up
Hindgut	226 ± 11	4 of 4	2.10	Up
Heart	353 ± 19	4 of 4	3.22	Up
Fat body	123 ± 18	4 of 4	1.12	None
Ovary	36 ± 1	4 of 4	0.30	Down
Testis	73 ± 3	4 of 4	0.70	Down
Male accessory glands	195 ± 6	4 of 4	1.80	Up
Virgin spermatheca	231 ± 4	4 of 4	2.11	Up
Mated spermatheca	265 ± 24	4 of 4	2.42	Up
Adult carcass	191 ± 13	4 of 4	1.70	Up
Larval CNS	652 ± 58	4 of 4	5.93	Up
Larval Salivary gland	153 ± 9	4 of 4	1.40	Up
Larval midgut	347 ± 13	4 of 4	3.16	Up
Larval tubule	438 ± 15	4 of 4	4.00	Up
Larval hindgut	219 ± 12	4 of 4	2.00	Up
Larval fat body	1096 ± 106	4 of 4	10.00	Up
Larval trachea	788 ± 40	4 of 4	7.17	Up
Larval carcass	233 ± 17	4 of 4	2.13	Up
S2 cells (growing)	16 ± 2	4 of 4	0.15	Down
Whole fly	109 ± 5	4 of 4

D-frizzled2 (fz2):

Annotation Number : CT33672
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016797
Gbrowse : chr3L:19136965-19137274 (-) // 100.0 //
Probeset : 1624219_s_at
Accessions : protein= NP_001097643; /// NP_001137971; /// NP_524155; /// NP_730389;, nucleotide= NM_001104173; /// NM_001144499; /// NM_079431; /// NM_168787;
Pathway : 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0016797.
TRiP has 3 RNAi stocks for FBgn0016797 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016797 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	43 ± 1	4 of 4	3.00	Up
Head	29 ± 1	4 of 4	2.10	Up
Eye	17 ± 1	4 of 4	1.24	None
Thoracicoabdominal ganglion	30 ± 4	4 of 4	2.10	Up
Salivary gland	27 ± 5	3 of 4	1.94	None
Crop	15 ± 2	2 of 4	1.10	None
Midgut	21 ± 3	4 of 4	1.50	None
Tubule	17 ± 1	3 of 4	1.20	Up
Hindgut	23 ± 2	4 of 4	1.70	Up
Heart	9 ± 2	3 of 4	0.67	None
Fat body	7 ± 6	0 of 4	0.53	None
Ovary	4 ± 1	0 of 4	0.30	Down
Testis	12 ± 2	3 of 4	0.90	None
Male accessory glands	30 ± 1	0 of 4	2.10	Up
Virgin spermatheca	5 ± 1	0 of 4	0.39	Down
Mated spermatheca	5 ± 2	0 of 4	0.36	Down
Adult carcass	14 ± 2	0 of 4	1.00	None
Larval CNS	41 ± 9	4 of 4	2.87	Up
Larval Salivary gland	13 ± 1	3 of 4	0.93	None
Larval midgut	25 ± 3	4 of 4	1.76	Up
Larval tubule	40 ± 2	4 of 4	2.90	Up
Larval hindgut	20 ± 2	4 of 4	1.45	None
Larval fat body	90 ± 9	4 of 4	6.30	Up
Larval trachea	19 ± 3	4 of 4	1.36	None
Larval carcass	24 ± 3	3 of 4	1.72	Up
S2 cells (growing)	8 ± 1	0 of 4	0.58	Down
Whole fly	14 ± 1	4 of 4

Looking for FBgn0016797. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720