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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016919 through 18771 annotations produced 1 hits



no mechanoreceptor potential B (nompB):

Annotation Number : CG12548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016919
Gbrowse : chr2L:21577204-21590287 (-) // 100.0 //
Probeset : 1635983_a_at
Accessions : protein= NP_523613; /// NP_724347;, nucleotide= NM_078889; /// NM_165385;
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic a
FlyMine data for FBgn0016919.
BioGrid reports that CG12548 interacts with CG13879 CG12645 CG13512 CG14534 CG15631 CG17221 CG3052 CG4328 CG4818 CG4909 CG5440 CG9761 CG8667 CG13900 .
TRiP has 1 RNAi stocks for FBgn0016919 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016919 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.30Down
Head8 ± 00 of 4 0.40Down
Eye5 ± 02 of 4 0.28Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.33Down
Crop3 ± 10 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule4 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20Down
Heart2 ± 00 of 4 0.11Down
Fat body3 ± 20 of 4 0.17Down
Ovary2 ± 00 of 4 0.10Down
Testis64 ± 74 of 4 3.20Up
Male accessory glands1145 ± 514 of 457.40Up
Virgin spermatheca8 ± 10 of 4 0.41Down
Mated spermatheca6 ± 10 of 4 0.32Down
Adult carcass14 ± 20 of 4 0.70None
Larval CNS5 ± 10 of 4 0.28Down
Larval Salivary gland7 ± 10 of 4 0.39Down
Larval midgut5 ± 10 of 4 0.25Down
Larval tubule6 ± 10 of 4 0.30Down
Larval hindgut1 ± 10 of 4 0.09Down
Larval fat body21 ± 82 of 4 1.10None
Larval trachea6 ± 31 of 4 0.32Down
Larval carcass3 ± 10 of 4 0.16Down
S2 cells (growing)3 ± 00 of 4 0.16Down
Whole fly20 ± 12 of 4

Looking for FBgn0016919. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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