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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016920 through 18771 annotations produced 1 hits



no mechanoreceptor potential C (nompC):

Annotation Number : CG11020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016920
Gbrowse : chr2L:5346236-5363629 (+) // 99.82 //
Probeset : 1637729_at
Accessions : protein= NP_001097089; /// NP_523483; /// NP_995634;, nucleotide= NM_001103619; /// NM_078759; /// NM_205912;
Pathway : 0005929 // cilium // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 00160
Interpro : 0003848 // 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity // inferred from electronic annota
FlyMine data for FBgn0016920.
Homophila reports that CG11020 is a close match (7e-11) to human gene HPC1;PRCA1;RNASEL;RNS4 (NP_066956), a gene associated with Prostate cancer 1, 176807, 601518 (3).
TRiP has 2 RNAi stocks for FBgn0016920 available for purchase.
VDRC has 1 RNAi stocks for FBgn0016920 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 1.40None
Head7 11 of 4 1.60None
Eye4 00 of 4 0.82None
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland20 50 of 4 3.96None
Crop15 32 of 4 3.10Up
Midgut15 30 of 4 3.10None
Tubule17 00 of 4 3.50Up
Hindgut13 30 of 4 2.60None
Heart4 10 of 4 0.91None
Fat body19 63 of 4 3.73Up
Ovary2 00 of 4 0.50None
Testis2 00 of 4 0.40None
Male accessory glands13 30 of 4 2.60None
Virgin spermatheca41 24 of 4 8.11Up
Mated spermatheca44 133 of 4 8.75None
Adult carcass11 10 of 4 2.30Up
Larval CNS13 24 of 4 2.61Up
Larval Salivary gland5 20 of 4 1.01None
Larval midgut3 10 of 4 0.67None
Larval tubule9 00 of 4 1.80None
Larval hindgut8 20 of 4 1.76None
Larval fat body11 20 of 4 2.30None
Larval trachea5 20 of 4 1.06None
Larval carcass8 10 of 4 1.63None
S2 cells (growing)3 10 of 4 0.73None
Whole fly5 10 of 4

Looking for FBgn0016920. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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