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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016926 through 18771 annotations produced 1 hits



smell impaired 21F (Pino):

Annotation Number : CG4710
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016926
Gbrowse : chr2L:1114651-1128953 (-) // 100.0 //
Probeset : 1633794_a_at
Accessions : protein= NP_608568; /// NP_722679;, nucleotide= NM_134724; /// NM_164405;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0016926.
BioGrid reports that CG4710 interacts with CG5462 .
VDRC has 4 RNAi stocks for FBgn0016926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain352 ± 194 of 4 0.50Down
Head681 ± 344 of 4 0.90None
Eye397 ± 264 of 4 0.53Down
Thoracicoabdominal ganglion344 ± 144 of 4 0.50Down
Salivary gland1689 ± 764 of 4 2.25Up
Crop1448 ± 404 of 4 1.90Up
Midgut481 ± 284 of 4 0.60Down
Tubule460 ± 1014 of 4 0.60Down
Hindgut996 ± 244 of 4 1.30Up
Heart1806 ± 814 of 4 2.41Up
Fat body2311 ± 2384 of 4 3.08Up
Ovary1014 ± 224 of 4 1.40Up
Testis310 ± 254 of 4 0.40Down
Male accessory glands191 ± 84 of 4 0.30Down
Virgin spermatheca685 ± 404 of 4 0.91None
Mated spermatheca849 ± 634 of 4 1.13None
Adult carcass1303 ± 274 of 4 1.70Up
Larval CNS199 ± 114 of 4 0.27Down
Larval Salivary gland266 ± 124 of 4 0.36Down
Larval midgut614 ± 654 of 4 0.82None
Larval tubule482 ± 224 of 4 0.60Down
Larval hindgut915 ± 184 of 4 1.22Up
Larval fat body983 ± 734 of 4 1.30Up
Larval trachea667 ± 1024 of 4 0.89None
Larval carcass483 ± 724 of 4 0.64Down
S2 cells (growing)495 ± 124 of 4 0.66Down
Whole fly750 ± 434 of 4

Looking for FBgn0016926. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime