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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016930 through 18771 annotations produced 1 hits



Dual specificity tyrosine phosphorylation-regulated kinase (smi35A):

Annotation Number : CG4551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016930
Gbrowse : chr2L:14184469-14197873 (-) // 100.0 //
Probeset : 1625183_at
Accessions : protein= NP_001033906; /// NP_001033907; /// NP_523564; /// NP_995710; /// NP_995711;, nucleotide= NM_001038817; /// NM_001038818; /// NM_078840; /// NM_205988; /// NM_205989;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0016930.
BDGP gene expression has embryonic in situ data for smi35A: 28 pix of staining in 9 body parts.
Homophila reports that CG4551 is a close match (6e-13) to human gene (NP_002746), a gene associated with .
TRiP has 2 RNAi stocks for FBgn0016930 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016930 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain437 264 of 4 8.50Up
Head225 274 of 4 4.40Up
Eye317 764 of 4 6.15Up
Thoracicoabdominal ganglion457 124 of 4 8.90Up
Salivary gland118 104 of 4 2.30Up
Crop129 124 of 4 2.50Up
Midgut68 34 of 4 1.30Up
Tubule22 14 of 4 0.40Down
Hindgut45 24 of 4 0.90None
Heart109 24 of 4 2.12Up
Fat body25 34 of 4 0.49Down
Ovary54 24 of 4 1.10None
Testis54 24 of 4 1.10None
Male accessory glands34 24 of 4 0.70Down
Virgin spermatheca39 14 of 4 0.77None
Mated spermatheca43 54 of 4 0.84None
Adult carcass43 14 of 4 0.80None
Larval CNS410 554 of 4 7.97Up
Larval Salivary gland17 34 of 4 0.34Down
Larval midgut47 34 of 4 0.92None
Larval tubule12 24 of 4 0.20Down
Larval hindgut30 24 of 4 0.60Down
Larval fat body94 244 of 4 1.80None
Larval trachea79 174 of 4 1.54Up
Larval carcass96 504 of 4 1.87None
S2 cells (growing)239 144 of 4 4.64Up
Whole fly51 54 of 4

Looking for FBgn0016930. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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