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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016974 through 18771 annotations produced 1 hits



():

Annotation Number : CR32747
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016974
Gbrowse : chrX:6255886-6256993 (-) // 100.0 //
Probeset : 1630498_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0016974.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.10Down
Eye0 00 of 4 0.04Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland0 00 of 4 0.06Down
Crop0 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.08Down
Fat body0 00 of 4 0.03Down
Ovary8 11 of 4 0.50Down
Testis226 144 of 414.00Up
Male accessory glands0 00 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca0 00 of 4 0.02Down
Adult carcass0 00 of 4 0.00Down
Larval CNS0 00 of 4 0.03Down
Larval Salivary gland0 00 of 4 0.03Down
Larval midgut0 00 of 4 0.03Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body11 61 of 4 0.70None
Larval trachea0 00 of 4 0.03Down
Larval carcass0 00 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.08Down
Whole fly16 04 of 4

Looking for FBgn0016974. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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