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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016976 through 18771 annotations produced 1 hits



stoned /// stoned (stnA /// stnB):

Annotation Number : CG40306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016975 /// FBgn0016976
Gbrowse : chrX:22382554-22406483 (-) // 100.0 //
Probeset : 1625007_a_at
Accessions : protein= NP_001036316; /// NP_001036317; /// NP_001036318; /// NP_001036319;, nucleotide= NM_001042851; /// NM_001042852; /// NM_001042853; /// NM_001042854;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // traceable author stat
FlyMine data for FBgn0016975 /// FBgn0016976.
BioGrid reports that CG40306 interacts with CG32498 CG18102 CG18102 CG3139 CG3139 CG40306 CG40306 CG40306 CG40306 CG40306 CG40306 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1963 ± 304 of 421.70Up
Head656 ± 364 of 4 7.20Up
Eye1047 ± 1144 of 411.55Up
Thoracicoabdominal ganglion2260 ± 754 of 424.90Up
Salivary gland22 ± 20 of 4 0.24Down
Crop8 ± 13 of 4 0.10Down
Midgut8 ± 22 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut8 ± 03 of 4 0.10Down
Heart11 ± 14 of 4 0.13Down
Fat body16 ± 14 of 4 0.18Down
Ovary2 ± 01 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands9 ± 11 of 4 0.10Down
Virgin spermatheca10 ± 03 of 4 0.12Down
Mated spermatheca10 ± 24 of 4 0.12Down
Adult carcass45 ± 24 of 4 0.50Down
Larval CNS743 ± 294 of 4 8.20Up
Larval Salivary gland7 ± 22 of 4 0.08Down
Larval midgut11 ± 14 of 4 0.13Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut5 ± 03 of 4 0.06Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea16 ± 213 of 4 0.18Down
Larval carcass11 ± 23 of 4 0.12Down
S2 cells (growing)56 ± 44 of 4 0.62Down
Whole fly90 ± 74 of 4

Looking for FBgn0016976. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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