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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016977 through 18771 annotations produced 1 hits



rhinoceros (spen):

Annotation Number : CG18497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016977
Gbrowse : chr2L:159033-203251 (+) // 100.0 //
Probeset : 1641518_a_at
Accessions : protein= NP_524718; /// NP_722615; /// NP_722616;, nucleotide= NM_079979; /// NM_164374; /// NM_164375;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0016977.
BDGP gene expression has embryonic in situ data for spen: 4 pix of staining in 1 body parts.
BioGrid reports that CG18497 interacts with CG2865 CG31534 CG33017 CG8292 CG1028 CG1028 CG3166 CG5460 CG5460 CG2845 CG2845 CG2845 CG17077 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG1374 CG3936 CG10334 CG1772 CG3938 CG3938 CG3938 CG3938 CG4654 CG6376 CG2189 .
TRiP has 1 RNAi stocks for FBgn0016977 available for purchase.
VDRC has 6 RNAi stocks for FBgn0016977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1140 294 of 4 6.00Up
Head345 204 of 4 1.80Up
Eye596 844 of 4 3.12Up
Thoracicoabdominal ganglion919 704 of 4 4.80Up
Salivary gland484 434 of 4 2.53Up
Crop534 394 of 4 2.80Up
Midgut328 224 of 4 1.70Up
Tubule416 344 of 4 2.20Up
Hindgut465 174 of 4 2.40Up
Heart459 214 of 4 2.40Up
Fat body384 344 of 4 2.01Up
Ovary182 94 of 4 1.00None
Testis33 34 of 4 0.20Down
Male accessory glands287 114 of 4 1.50Up
Virgin spermatheca523 554 of 4 2.74Up
Mated spermatheca613 204 of 4 3.21Up
Adult carcass242 324 of 4 1.30None
Larval CNS1109 1024 of 4 5.81Up
Larval Salivary gland492 234 of 4 2.58Up
Larval midgut299 204 of 4 1.57Up
Larval tubule383 154 of 4 2.00Up
Larval hindgut426 54 of 4 2.23Up
Larval fat body296 344 of 4 1.60Up
Larval trachea1023 544 of 4 5.36Up
Larval carcass448 114 of 4 2.35Up
S2 cells (growing)498 94 of 4 2.61Up
Whole fly191 144 of 4

Looking for FBgn0016977. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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