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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0016984 through 18771 annotations produced 1 hits



Skittles (sktl):

Annotation Number : CG9985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016984
Gbrowse : chr2R:16714915-16719919 (-) // 100.0 //
Probeset : 1624275_at
Accessions : protein= NP_477206;, nucleotide= NM_057858;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005938 // cell cortex // inferred from direct
Interpro : 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase a
FlyMine data for FBgn0016984.
BDGP gene expression has embryonic in situ data for sktl: 34 pix of staining in 17 body parts.
Homophila reports that CG9985 is a close match (4e-118) to human gene LCCS3;PIP5K1C (NP_036530), a gene associated with Lethal congenital contractural syndrome 3, 611369 (3).
BioGrid reports that CG9985 interacts with CG9986 .
TRiP has 2 RNAi stocks for FBgn0016984 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016984 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 54 of 4 0.50Down
Head64 24 of 4 0.80None
Eye58 34 of 4 0.70Down
Thoracicoabdominal ganglion43 14 of 4 0.50Down
Salivary gland138 144 of 4 1.68Up
Crop122 64 of 4 1.50Up
Midgut97 84 of 4 1.20None
Tubule127 54 of 4 1.50Up
Hindgut158 84 of 4 1.90Up
Heart68 64 of 4 0.84None
Fat body97 154 of 4 1.18None
Ovary128 34 of 4 1.60Up
Testis65 24 of 4 0.80None
Male accessory glands82 34 of 4 1.00None
Virgin spermatheca97 34 of 4 1.19None
Mated spermatheca95 34 of 4 1.16None
Adult carcass96 174 of 4 1.20None
Larval CNS65 94 of 4 0.79None
Larval Salivary gland125 84 of 4 1.52Up
Larval midgut171 104 of 4 2.08Up
Larval tubule115 74 of 4 1.40Up
Larval hindgut168 54 of 4 2.04Up
Larval fat body78 54 of 4 1.00None
Larval trachea115 134 of 4 1.40Up
Larval carcass115 54 of 4 1.40Up
S2 cells (growing)325 64 of 4 3.94Up
Whole fly82 64 of 4

Looking for FBgn0016984. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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