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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0017430 through 18771 annotations produced 1 hits



Negative elongation factor E (Nelf-E):

Annotation Number : CG5994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017430
Gbrowse : chr3L:8592538-8593974 (-) // 100.0 //
Probeset : 1639102_at
Accessions : protein= NP_648241;, nucleotide= NM_139984;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0008023 // transcription elongation factor complex // infe
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0017430.
BDGP gene expression has embryonic in situ data for CG5994: 8 pix of staining in 1 body parts.
BioGrid reports that CG5994 interacts with CG7399 .
TRiP has 1 RNAi stocks for FBgn0017430 available for purchase.
VDRC has 2 RNAi stocks for FBgn0017430 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain276 54 of 4 1.90Up
Head112 34 of 4 0.80Down
Eye68 14 of 4 0.48Down
Thoracicoabdominal ganglion266 24 of 4 1.90Up
Salivary gland73 54 of 4 0.51Down
Crop79 64 of 4 0.60Down
Midgut64 24 of 4 0.40Down
Tubule81 24 of 4 0.60Down
Hindgut59 14 of 4 0.40Down
Heart45 24 of 4 0.32Down
Fat body51 54 of 4 0.36Down
Ovary292 94 of 4 2.00Up
Testis276 44 of 4 1.90Up
Male accessory glands98 14 of 4 0.70Down
Virgin spermatheca62 24 of 4 0.43Down
Mated spermatheca63 14 of 4 0.44Down
Adult carcass61 24 of 4 0.40Down
Larval CNS182 84 of 4 1.27Up
Larval Salivary gland168 34 of 4 1.17Up
Larval midgut39 73 of 4 0.27Down
Larval tubule125 44 of 4 0.90None
Larval hindgut58 34 of 4 0.41Down
Larval fat body188 204 of 4 1.30None
Larval trachea119 154 of 4 0.84None
Larval carcass96 54 of 4 0.67Down
S2 cells (growing)117 64 of 4 0.82Down
Whole fly143 74 of 4

Looking for FBgn0017430. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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