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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0017448 through 18771 annotations produced 1 hits



(CG2187):

Annotation Number : CG2187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017448
Gbrowse : chr3R:27581077-27584361 (-) // 100.0 //
Probeset : 1638154_at
Accessions : protein= NP_651890;, nucleotide= NM_143633;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008507 // sodium:iodide symporter activity /
FlyMine data for FBgn0017448.
Homophila reports that CG2187 is a close match (2e-82) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 3 RNAi stocks for FBgn0017448 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.10Down
Head5 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.10Down
Salivary gland29 ± 32 of 4 0.41Down
Crop10 ± 02 of 4 0.10Down
Midgut11 ± 22 of 4 0.20Down
Tubule2332 ± 3314 of 432.40Up
Hindgut10 ± 03 of 4 0.20Down
Heart6 ± 22 of 4 0.09Down
Fat body12 ± 62 of 4 0.17Down
Ovary100 ± 34 of 4 1.40Up
Testis5 ± 11 of 4 0.10Down
Male accessory glands15 ± 23 of 4 0.20Down
Virgin spermatheca14 ± 02 of 4 0.20Down
Mated spermatheca14 ± 43 of 4 0.20Down
Adult carcass26 ± 23 of 4 0.40Down
Larval CNS16 ± 44 of 4 0.24Down
Larval Salivary gland14 ± 12 of 4 0.21Down
Larval midgut4 ± 20 of 4 0.06Down
Larval tubule321 ± 414 of 4 4.50Up
Larval hindgut8 ± 22 of 4 0.12Down
Larval fat body8 ± 31 of 4 0.10Down
Larval trachea10 ± 22 of 4 0.15Down
Larval carcass11 ± 03 of 4 0.16Down
S2 cells (growing)6 ± 01 of 4 0.09Down
Whole fly72 ± 74 of 4

Looking for FBgn0017448. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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