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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0017550 through 18771 annotations produced 1 hits



Regena (Rga):

Annotation Number : CG2161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017550
Gbrowse : chr3R:1433064-1438830 (-) // 100.0 //
Probeset : 1628285_a_at
Accessions : protein= NP_524239; /// NP_730966;, nucleotide= NM_079515; /// NM_169080;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0030528 // transcription regulator activity // inferred from mutant phenotype /// 0030528 // transcription regulator act
FlyMine data for FBgn0017550.
BDGP gene expression has embryonic in situ data for Rga: 21 pix of staining in 14 body parts.
BioGrid reports that CG2161 interacts with CG2759 .
TRiP has 1 RNAi stocks for FBgn0017550 available for purchase.
VDRC has 1 RNAi stocks for FBgn0017550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain375 164 of 4 1.70Up
Head184 54 of 4 0.80Down
Eye190 54 of 4 0.84Down
Thoracicoabdominal ganglion287 34 of 4 1.30Up
Salivary gland400 144 of 4 1.77Up
Crop193 44 of 4 0.90Down
Midgut178 44 of 4 0.80Down
Tubule283 74 of 4 1.20Up
Hindgut198 54 of 4 0.90None
Heart196 54 of 4 0.87None
Fat body179 154 of 4 0.79Down
Ovary429 54 of 4 1.90Up
Testis84 14 of 4 0.40Down
Male accessory glands278 124 of 4 1.20Up
Virgin spermatheca243 64 of 4 1.07None
Mated spermatheca203 74 of 4 0.90None
Adult carcass176 144 of 4 0.80Down
Larval CNS414 154 of 4 1.83Up
Larval Salivary gland314 204 of 4 1.39Up
Larval midgut200 254 of 4 0.89None
Larval tubule328 14 of 4 1.40Up
Larval hindgut211 164 of 4 0.93None
Larval fat body237 114 of 4 1.00None
Larval trachea214 54 of 4 0.95None
Larval carcass252 284 of 4 1.11None
S2 cells (growing)344 104 of 4 1.52Up
Whole fly226 114 of 4

Looking for FBgn0017550. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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