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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0017551 through 18771 annotations produced 1 hits

regulator of cyclin A (Rca1):

Annotation Number : CG10800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017551
Gbrowse : chr2L:6852323-6853876 (+) // 100.0 //
Probeset : 1631034_at
Accessions : protein= NP_477214;, nucleotide= NM_057866;
Pathway : 0005634 // nucleus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0017551.
BDGP gene expression has embryonic in situ data for Rca1: 10 pix of staining in 10 body parts.
BioGrid reports that CG10800 interacts with CG11444 CG12673 CG13133 CG13822 CG14151 CG15529 CG16983 CG17522 CG3139 CG3448 CG4335 CG8881 CG12227 CG14121 CG14206 CG18627 CG4079 CG5940 CG5940 CG3000 CG4336 CG3938 CG3938 CG3938 CG3938 .
VDRC has 2 RNAi stocks for FBgn0017551 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain155 134 of 4 0.40Down
Head68 64 of 4 0.20Down
Eye41 44 of 4 0.12Down
Thoracicoabdominal ganglion125 44 of 4 0.40Down
Salivary gland51 42 of 4 0.15Down
Crop63 54 of 4 0.20Down
Midgut30 14 of 4 0.10Down
Tubule41 24 of 4 0.10Down
Hindgut47 14 of 4 0.10Down
Heart22 24 of 4 0.07Down
Fat body26 90 of 4 0.08Down
Ovary735 314 of 4 2.10Up
Testis190 64 of 4 0.60Down
Male accessory glands41 23 of 4 0.10Down
Virgin spermatheca29 34 of 4 0.08Down
Mated spermatheca26 34 of 4 0.08Down
Adult carcass48 43 of 4 0.10Down
Larval CNS359 74 of 4 1.04None
Larval Salivary gland37 34 of 4 0.11Down
Larval midgut32 32 of 4 0.09Down
Larval tubule56 34 of 4 0.20Down
Larval hindgut36 14 of 4 0.10Down
Larval fat body69 144 of 4 0.20Down
Larval trachea58 24 of 4 0.17Down
Larval carcass43 44 of 4 0.13Down
S2 cells (growing)140 44 of 4 0.41Down
Whole fly345 294 of 4

Looking for FBgn0017551. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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